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Cheap flights from Kota Kinabalu to Tokyo from RM 889

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 13/10. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — TYO
3 Jun — 10 Jun1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Tokyo

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Tokyo
Explore the most affordable flight options available from Kota Kinabalu to Tokyo. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 4 May 2026.

Mon 18/500:35
BKI
-
NRT
1 stop9h 00m
Multiple Airlines
Mon 25/508:20
NRT
-
BKI
1 stop12h 10m
Multiple Airlines
Deal found 4/5RM 1,492
Tue 23/622:00
BKI
-
NRT
1 stop32h 05m
Scoot
Sat 27/608:20
NRT
-
BKI
1 stop27h 55m
Scoot
Deal found 1/5RM 1,508
Mon 18/500:35
BKI
-
NRT
1 stop9h 00m
Multiple Airlines
Sun 24/508:20
NRT
-
BKI
1 stop25h 30m
Multiple Airlines
Deal found 4/5RM 1,575
Mon 11/520:30
BKI
-
NRT
2 stops22h 30m
Scoot
Wed 13/508:20
NRT
-
BKI
1 stop12h 10m
Scoot
Deal found 30/4RM 1,607
Tue 23/612:15
BKI
-
NRT
2 stops31h 35m
Multiple Airlines
Sat 27/608:20
NRT
-
BKI
1 stop29h 30m
Multiple Airlines
Deal found 1/5RM 1,647
Sun 14/613:50
BKI
-
HND
1 stop10h 15m
Scoot
Sat 20/602:20
HND
-
BKI
1 stop11h 30m
Scoot
Deal found 30/4RM 1,654
Thu 18/622:00
BKI
-
HND
1 stop26h 05m
Scoot
Wed 24/602:20
HND
-
BKI
1 stop19h 40m
Scoot
Deal found 4/5RM 1,662
Thu 4/622:00
BKI
-
HND
1 stop26h 05m
Scoot
Wed 10/602:20
HND
-
BKI
1 stop19h 40m
Scoot
Deal found 4/5RM 1,670
Sun 10/500:55
BKI
-
NRT
1 stop13h 35m
Multiple Airlines
Wed 13/508:20
NRT
-
BKI
1 stop12h 10m
Multiple Airlines
Deal found 30/4RM 1,674
Tue 23/622:00
BKI
-
HND
1 stop26h 05m
Scoot
Fri 26/602:20
HND
-
BKI
1 stop18h 25m
Scoot
Deal found 1/5RM 1,678
Tue 25/819:45
BKI
-
HND
1 stop28h 20m
Scoot
Sat 29/802:20
HND
-
BKI
1 stop11h 45m
Scoot
Deal found 30/4RM 1,750
Wed 17/616:30
BKI
-
HND
2 stops31h 35m
Multiple Airlines
Tue 23/602:20
HND
-
BKI
1 stop18h 10m
Multiple Airlines
Deal found 3/5RM 1,773

Find flight deals from Kota Kinabalu to Tokyo

Discover tips and strategies to find the most affordable flight options for your journey from Kota Kinabalu (BKI) to Tokyo (TYO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 4 May 2026.

Round-trip from

RM 1,492

One-way from

RM 889

Popular in

December

Cheapest in

July

Average price

RM 1,813
Scoot
  • Scoot
  • 18/5-25/5
  • 2 total stops
  • 21h 10m total
  • Kota Kinabalu to Tokyo
Search Deals
Scoot
  • Scoot
  • 13/10
  • 1 total stop
  • 11h 50m total
  • Kota Kinabalu to Tokyo
Search Deals
Highest demand for flights based on searches. 4% potential increase in price (RM 340 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 88 potential savings vs. average return price).
Search Deals
Average for round-trip flights in May 2026
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Tokyo that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 4 May 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Tokyo that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Wed 12/8

09:50-01:05

1 stop14h 15m

Tokyo Haneda

Tue 25/8

02:20-19:30

1 stop18h 10m

RM 1,777

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Thu 15/10

12:15-01:05

1 stop11h 50m

Tokyo Haneda

Sun 18/10

02:20-19:30

1 stop18h 10m

RM 1,829

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Mon 18/5

00:35-10:35

1 stop9h 00m

Tokyo Narita

Mon 25/5

21:15-11:15

2 stops15h 00m

RM 1,849

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 23/6

22:00-19:55

2 stops20h 55m

Tokyo Haneda

Fri 26/6

02:20-19:45

1 stop18h 25m

RM 1,892

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Mon 14/9

20:30-11:15

2 stops13h 45m

Tokyo Narita

Mon 21/9

21:15-11:15

2 stops15h 00m

RM 1,932

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Thu 18/6

16:30-01:05

2 stops31h 35m

Tokyo Haneda

Wed 24/6

02:20-21:00

1 stop19h 40m

RM 1,952

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sun 31/5

00:35-10:35

1 stop9h 00m

Tokyo Narita

Mon 8/6

19:00-21:00

2 stops27h 00m

RM 1,980
Fastest return journey

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Thu 1/10

07:25-17:35

1 stop9h 10m

Tokyo Narita

Mon 12/10

08:20-19:30

1 stop12h 10m

RM 1,988

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sat 30/5

00:35-11:05

1 stop9h 30m

Tokyo Narita

Sun 7/6

09:15-22:25

1 stop14h 10m

RM 2,015

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sun 20/9

01:15-19:45

1 stop17h 30m

Tokyo Narita

Thu 24/9

21:35-00:30

1 stop27h 55m

RM 2,043

Flights are sorted by cheapest return flights first.

Deals found on 30/4

Showing 1-10 of 36 resultsSorted by cheapest first
1
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Best time to book a flight from Kota Kinabalu to Tokyo

Have a flexible travel schedule? Discover the best time to fly to Tokyo from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Tokyo

How far ahead should I book a flight from Kota Kinabalu to Tokyo?

The price you pay for your flight from Kota Kinabalu to Tokyo may vary depending on when you book. For the best chance of a lower fare, look to book 3 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from Kota Kinabalu to Tokyo?

Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Tokyo (average of RM 587). Flying from Kota Kinabalu to Tokyo in February is currently the most expensive (average of RM 1,345). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

How much does it cost for a return flight from Kota Kinabalu to Tokyo?

What’s the top stopover airport for flights from Kota Kinabalu to Tokyo?

Share of one-stop return flights from Kota Kinabalu to Tokyo chosen by Cheapflights users in the past 12 months, using the same stopover each way.

Shanghai (PVG) – chosen by Cheapflights users on 36% of one-stop itineraries from Kota Kinabalu to Tokyo on Cheapflights.

What’s the cheapest stopover airport for flights from Kota Kinabalu to Tokyo?

Average return fare for one-stop flights from Kota Kinabalu to Tokyo, chosen by Cheapflights users in the past 12 months, with the same stopover each way.

Manila (MNL) is the most affordable one-stop option, with an average return flight price of RM 1,181.

What’s the fastest stopover option from Kota Kinabalu to Tokyo?

Shortest average travel time for one-stop one-way flights from Kota Kinabalu to Tokyo, based on itineraries clicked by Cheapflights users over the past 12 months, grouped by stopover airport.

Flights via Bandar Seri Begawan (BWN) have the shortest average one-way travel time for one-stop routes: 9h 25m.

Which airport typically offers the quickest stopover for flights from Kota Kinabalu to Tokyo?

Average stopover duration for one-stop one-way flights from Kota Kinabalu to Tokyo, chosen by Cheapflights users in the last 12 months, grouped by stopover airport.

Flights via Kuala Lumpur (KUL) offer the fastest connection on this route, with an average stopover time of 1h 30m.

How often are flights from Kota Kinabalu to Tokyo delayed?

About 25% of weekly flights between Kota Kinabalu and Tokyo have experienced delays in the past year, with the average delay time being 24 minutes.

What is the most punctual flight time for Kota Kinabalu to Tokyo flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Reviews of airlines servicing Tokyo

Get insights into the airlines that provide service to Tokyo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Tokyo. Reviews last updated 4 May 2026.
See what other customers who have flown with China Southern,China Eastern, andHK Express from Kota Kinabalu to Tokyo have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5
China Southern
7.4
Good
151 reviews
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5
China Eastern
7.3
Good
209 reviews
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5
HK Express
7.3
Good
44 reviews
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5
Philippines AirAsia
6.8
Okay
126 reviews
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5
Scoot
6.7
Okay
326 reviews
China Southern
7.4
Good
151 reviews
Check prices

Boarding

7.8

Comfort

7.6

Food

7.2

Overall

7.4

Entertainment

7.1

Crew

8.0

Reviews

1 / 7
2.0
Mediocre

Anonymous,Mar 2026

NRT - CAN

The reclinjng didnot work in our seats. The TV didnot work. The crew was not helpful. The food was awful. Overall very very poor experience. I traveled with the family of 5

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Tokyo. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Tokyo?

    Kota Kinabalu (BKI), located 5.8 km from the city centre, is the airport you fly out of when you book flights from Kota Kinabalu to Tokyo. 4 airlines have flights from Kota Kinabalu to Tokyo on a regular basis. Booking flights from Kota Kinabalu to Tokyo should not be difficult; the airport handles an average of 0 outbound flights to Tokyo per day.

  • How long is the flight from Kota Kinabalu to Tokyo?

    Departing from Kota Kinabalu to Tokyo will take you 14h 15m. Airlines will cover a distance of 4088 km. Both multi-stop and direct flights can be found to your destination and back.

  • What are the cheapest airlines flying from Kota Kinabalu to Tokyo round-trip?

    Our cheapest airline available from Kota Kinabalu to Tokyo is Philippines AirAsia. Our recent data shows that you can find tickets from as low as RM 1,008 on this airline. Additional options worth looking into are Scoot and HK Express, starting at RM 1,170 and RM 1,301 round-trip. Users have found that Philippines AirAsia is 38% cheaper than the other options available to this destination.

  • Can I find deals for flights from Kota Kinabalu to Tokyo that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Tokyo flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Tokyo?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Tokyo.

  • Can I find deals for business class flights from Kota Kinabalu to Tokyo?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Tokyo by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Tokyo?

    Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Tokyo (average of RM 587). Flying from Kota Kinabalu to Tokyo in February is currently the most expensive (average of RM 1,345). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Travelling to a place near Tokyo?

Book flights to Tokyo if you plan to visit one of these locations
Chiba
Kamakura
Urayasu
Fujiyoshida
Hakone
Saitama
Kawasaki

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Fly from Kota Kinabalu to Tokyo on these airlines

Choose from the following airlines for your flight from Kota Kinabalu to Tokyo. Flights are based on user searches made on Cheapflights and were last updated on 4 May 2026.
Scoot flights from Kota Kinabalu to Tokyo
JAL flights from Kota Kinabalu to Tokyo

Top 5 airlines flying from Kota Kinabalu to Tokyo

Discover the top 5 airlines that operate flights from Kota Kinabalu to Tokyo. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 4 May 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapestRM 1,008AverageRM 1,138FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
ScootCheapestRM 1,170AverageRM 1,670FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
HK ExpressCheapestRM 1,301AverageRM 1,563FlexibilityNo cancel feeOn-time90%
Search HK Express flights
China EasternCheapestRM 1,424AverageRM 1,587FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Malaysia AirlinesCheapestRM 1,631AverageRM 2,146FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Tokyo?

Cheapflights makes it easy to find Kota Kinabalu to Tokyo flights by helping our users search from 900+ travel sites for deals. We also provide you with filters for cabin, price, airline, airports, number of stops, and many more to narrow down that perfect flight.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Tokyo?

Cheapflights taps into our reliable network of hundreds of airlines and travel agencies to find the best deals for flights from Kota Kinabalu to Tokyo for you. Better yet — we are completely free to use.

Can Cheapflights find flights from Kota Kinabalu to Tokyo with no change fees?

Yes! Cheapflights helps users easily find flights from Kota Kinabalu to Tokyo with no change fees.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Tokyo become cheaper?

Yes! Start tracking prices for Kota Kinabalu to Tokyo flights today and get alerted whenever prices for these flights change. To access this feature, click the bell icon next to the flight deals above, which will prompt you for a valid email address to receive your alerts.

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