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Cheap flights from Kota Kinabalu to Tokyo from RM 643

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 29/4. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — TYO
8 Mar — 15 Mar1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Tokyo

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Tokyo
Explore the most affordable flight options available from Kota Kinabalu to Tokyo. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 6 February 2026.

Fri 6/301:30
BKI
-
NRT
1 stop17h 30m
HK Express
Thu 12/315:25
NRT
-
BKI
1 stop10h 05m
HK Express
Deal found 4/2RM 1,356
Fri 6/301:30
BKI
-
HND
1 stop22h 15m
HK Express
Thu 12/306:35
HND
-
BKI
1 stop18h 55m
HK Express
Deal found 4/2RM 1,400
Sun 13/901:15
BKI
-
NRT
1 stop16h 10m
HK Express
Fri 18/920:40
NRT
-
BKI
1 stop28h 50m
HK Express
Deal found 5/2RM 1,427
Mon 11/501:15
BKI
-
NRT
1 stop12h 30m
HK Express
Thu 21/508:00
NRT
-
BKI
1 stop17h 30m
HK Express
Deal found 2/2RM 1,431
Fri 5/601:15
BKI
-
NRT
1 stop13h 50m
HK Express
Sat 13/615:45
NRT
-
BKI
1 stop9h 45m
HK Express
Deal found 3/2RM 1,447
Fri 4/901:15
BKI
-
HND
1 stop23h 05m
HK Express
Sat 12/906:35
HND
-
BKI
1 stop18h 55m
HK Express
Deal found 3/2RM 1,447
Fri 4/901:15
BKI
-
NRT
1 stop17h 30m
HK Express
Sat 12/919:25
NRT
-
BKI
1 stop30h 05m
HK Express
Deal found 3/2RM 1,455
Sun 8/301:30
BKI
-
NRT
1 stop15h 35m
HK Express
Mon 16/320:55
NRT
-
BKI
1 stop28h 35m
HK Express
Deal found 2/2RM 1,459
Tue 12/511:45
BKI
-
HND
2 stops33h 50m
Multiple Airlines
Wed 20/502:00
HND
-
BKI
1 stop15h 35m
Multiple Airlines
Deal found 2/2RM 1,463
Fri 18/901:15
BKI
-
NRT
1 stop13h 50m
Multiple Airlines
Sat 26/908:30
NRT
-
BKI
1 stop27h 45m
Multiple Airlines
Deal found 2/2RM 1,490
Sun 8/301:30
BKI
-
HND
1 stop20h 15m
HK Express
Mon 16/306:35
HND
-
BKI
1 stop18h 55m
HK Express
Deal found 2/2RM 1,502
Fri 6/301:30
BKI
-
NRT
1 stop17h 30m
Multiple Airlines
Thu 12/319:00
NRT
-
BKI
2 stops25h 55m
Multiple Airlines
Deal found 2/2RM 1,514

Find flight deals from Kota Kinabalu to Tokyo

Discover tips and strategies to find the most affordable flight options for your journey from Kota Kinabalu (BKI) to Tokyo (TYO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 6 February 2026.

Round-trip from

RM 1,356

One-way from

RM 643

Popular in

January

Cheapest in

June

Average price

RM 1,766

Good one-way deal

RM 1,494 or less
HK Express
  • HK Express
  • 6/3-12/3
  • 2 total stops
  • 27h 35m total
  • Kota Kinabalu to Tokyo
Search Deals
29/4
  • 29/4
  • 1 total stop
  • 15h 15m total
  • Kota Kinabalu to Tokyo
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (RM 1,042 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 117 potential savings vs. average return price).
Search Deals
Average for round-trip flights in February 2026
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Tokyo (TYO).
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Tokyo that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 6 February 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Tokyo that are best for you.

Fly from

Kota Kinabalu

Fly to

Tokyo

Route

Departure

Return

Price

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Fri 6/3

01:30-00:45

1 stop22h 15m

Tokyo Haneda

Thu 12/3

06:35-00:30

1 stop18h 55m

RM 1,400

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Fri 5/6

01:15-16:05

1 stop13h 50m

Tokyo Narita

Sat 13/6

15:45-00:30

1 stop9h 45m

RM 1,447

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Mon 8/6

01:15-16:05

1 stop13h 50m

Tokyo Narita

Sat 13/6

15:45-00:30

1 stop9h 45m

RM 1,534

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 12/5

12:15-22:35

3 stops33h 20m

Tokyo Haneda

Wed 20/5

02:00-20:05

2 stops19h 05m

RM 1,593

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 11/5

01:15-22:55

1 stop20h 40m

Tokyo Haneda

Thu 21/5

06:35-00:30

1 stop18h 55m

RM 1,605

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Sat 6/6

16:35-22:35

2 stops29h 00m

Tokyo Haneda

Fri 12/6

02:00-16:35

1 stop15h 35m

RM 1,644

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Mon 11/5

01:15-16:05

1 stop13h 50m

Tokyo Narita

Thu 21/5

12:30-21:00

2 stops33h 30m

RM 1,668

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sat 7/3

09:20-20:00

1 stop9h 40m

Tokyo Narita

Thu 12/3

19:00-22:30

3 stops28h 30m

RM 1,676

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sun 8/3

01:30-19:05

1 stop16h 35m

Tokyo Narita

Mon 16/3

13:50-19:00

2 stops30h 10m

RM 1,715

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sun 24/5

01:15-14:45

1 stop12h 30m

Tokyo Narita

Mon 1/6

15:45-00:30

1 stop9h 45m

RM 1,759

Flights are sorted by cheapest return flights first.

Deals found on 2/2

Showing 1-10 of 42 results
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Best time to book a flight from Kota Kinabalu to Tokyo

Have a flexible travel schedule? Discover the best time to fly to Tokyo from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Tokyo

How far ahead should I book a flight from Kota Kinabalu to Tokyo?

Use this chart to determine the optimal time to book a return flight from Kota Kinabalu to Tokyo. Price data was last updated on 30 January 2026.

The price you pay for your flight from Kota Kinabalu to Tokyo may vary depending on when you book. For the best chance of a lower fare, look to book 30 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from Kota Kinabalu to Tokyo?

Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Tokyo (average of RM 789). Flying from Kota Kinabalu to Tokyo in January is currently the most expensive (average of RM 1,510). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What’s the top stopover airport for flights from Kota Kinabalu to Tokyo?

Share of one-stop return flights from Kota Kinabalu to Tokyo chosen by Cheapflights users in the past 12 months, using the same stopover each way.

Shanghai (PVG) – chosen by Cheapflights users on 39% of one-stop itineraries from Kota Kinabalu to Tokyo on Cheapflights.

What’s the cheapest stopover airport for flights from Kota Kinabalu to Tokyo?

Average return fare for one-stop flights from Kota Kinabalu to Tokyo, chosen by Cheapflights users in the past 12 months, with the same stopover each way.

Manila (MNL) is the most affordable one-stop option, with an average return flight price of RM 1,190.

What’s the fastest stopover option from Kota Kinabalu to Tokyo?

Shortest average travel time for one-stop one-way flights from Kota Kinabalu to Tokyo, based on itineraries clicked by Cheapflights users over the past 12 months, grouped by stopover airport.

Flights via Incheon (ICN) have the shortest average one-way travel time for one-stop routes: 9h 10m.

Which airport typically offers the quickest stopover for flights from Kota Kinabalu to Tokyo?

Average stopover duration for one-stop one-way flights from Kota Kinabalu to Tokyo, chosen by Cheapflights users in the last 12 months, grouped by stopover airport.

Flights via Kuala Lumpur (KUL) offer the fastest connection on this route, with an average stopover time of 1h 30m.

How often are flights from Kota Kinabalu to Tokyo delayed?

About 8% of weekly flights between Kota Kinabalu and Tokyo have experienced delays in the past year, with the average delay time being 39 minutes.

What is the most punctual flight time for Kota Kinabalu to Tokyo flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Tokyo flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 10% of flights being delayed.

Reviews of airlines servicing Tokyo

Get insights into the airlines that provide service to Tokyo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Tokyo. Reviews last updated 6 February 2026.
See what other customers who have flown with China Southern, China Eastern, andHK Express from Kota Kinabalu to Tokyo have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.
China Southern
7.3
Good
137 reviews
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.
China Eastern
7.2
Good
192 reviews
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.
HK Express
7.2
Good
43 reviews
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.
Philippines AirAsia
6.7
Okay
121 reviews
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.
Scoot
6.7
Okay
317 reviews
China Southern
7.3
Good
137 reviews
Check prices

Overall

7.3

Crew

8.0

Food

7.2

Entertainment

7.1

Boarding

7.7

Comfort

7.6

Reviews

1 / 6
2.0
Mediocre

Anonymous,Jan 2026

NBO - CSX

I was refused boarding due to the Australian CTD I used to travel on at BNE Airport, and did not receive any refund. Instead, considering that I was travelling to meet my wife and kid after 4 years of separation and that all the arrangements had been made, I had to book a different flight ticket (Qatar Airways), which was too expensive.

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Tokyo. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Tokyo?

    Kota Kinabalu (BKI), located 5.8 km from the city centre, is the airport you fly out of when you book flights from Kota Kinabalu to Tokyo. 7 airlines have flights from Kota Kinabalu to Tokyo on a regular basis. Booking flights from Kota Kinabalu to Tokyo should not be difficult; the airport handles an average of 0 outbound flights to Tokyo per day.

  • How long is the flight from Kota Kinabalu to Tokyo?

    Departing from Kota Kinabalu to Tokyo will take you 22h 15m. Airlines will cover a distance of 4088 km.

  • What are the cheapest airlines flying from Kota Kinabalu to Tokyo round-trip?

    Our cheapest airline available from Kota Kinabalu to Tokyo is Philippines AirAsia. Our recent data shows that you can find tickets from as low as RM 1,001 on this airline. Additional options worth looking into are Scoot and HK Express, starting at RM 1,163 and RM 1,293 round-trip. Users have found that Philippines AirAsia is 37% cheaper than the other options available to this destination.

  • What are the cheapest airlines to fly from Kota Kinabalu to Tokyo one-way?

    One-way options have recently been found by users for as low as RM 465 on Philippines AirAsia. Other airlines that offer cheap prices include Batik Air from RM 667 and T'way Air from RM 832 one-way.

  • Can I find deals for flights from Kota Kinabalu to Tokyo that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Tokyo flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Tokyo?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Tokyo.

  • Can I find deals for business class flights from Kota Kinabalu to Tokyo?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Tokyo by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Tokyo?

    Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Tokyo (average of RM 789). Flying from Kota Kinabalu to Tokyo in January is currently the most expensive (average of RM 1,510). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Travelling to a place near Tokyo?

Book flights to Tokyo if you plan to visit one of these locations
Chiba
Kamakura
Urayasu
Fujiyoshida
Hakone
Saitama
Kawasaki

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Fly from Kota Kinabalu to Tokyo on these airlines

Choose from the following airlines for your flight from Kota Kinabalu to Tokyo. Flights are based on user searches made on Cheapflights and were last updated on 6 February 2026.
Scoot flights from Kota Kinabalu to Tokyo
JAL flights from Kota Kinabalu to Tokyo

Top 7 airlines flying from Kota Kinabalu to Tokyo

Discover the top 7 airlines that operate flights from Kota Kinabalu to Tokyo. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 6 February 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapestRM 1,001AverageRM 1,131FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
ScootCheapestRM 1,163AverageRM 1,703FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
HK ExpressCheapestRM 1,293AverageRM 1,539FlexibilityNo cancel feeOn-time90%
Search HK Express flights
China EasternCheapestRM 1,330AverageRM 1,561FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Batik AirCheapestRM 1,367AverageRM 1,782FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights
Malaysia AirlinesCheapestRM 1,621AverageRM 2,138FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
China SouthernCheapestRM 1,902AverageRM 2,480FlexibilityNo cancel feeOn-time69%
Search China Southern flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Tokyo?

Cheapflights makes it easy to find Kota Kinabalu to Tokyo flights by helping our users search from 900+ travel sites for deals. We also provide you with filters for cabin, price, airline, airports, number of stops, and many more to narrow down that perfect flight.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Tokyo?

Cheapflights taps into our reliable network of hundreds of airlines and travel agencies to find the best deals for flights from Kota Kinabalu to Tokyo for you. Better yet — we are completely free to use.

Can Cheapflights find flights from Kota Kinabalu to Tokyo with no change fees?

Yes! Cheapflights helps users easily find flights from Kota Kinabalu to Tokyo with no change fees.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Tokyo become cheaper?

Yes! Start tracking prices for Kota Kinabalu to Tokyo flights today and get alerted whenever prices for these flights change. To access this feature, click the bell icon next to the flight deals above, which will prompt you for a valid email address to receive your alerts.

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