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Cheap flights from Tokyo to Kota Kinabalu from RM 770

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 12/9. Fares are subject to change and may not be available on all flights or dates of travel.
TYO — BKI
25 Jun — 2 Jul1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Tokyo to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Tokyo to Kota Kinabalu
Explore the most affordable flight options available from Tokyo to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 26 May 2026.

Mon 6/715:30
NRT
-
BKI
1 stop21h 35m
XiamenAir
Thu 9/713:05
BKI
-
NRT
1 stop23h 50m
XiamenAir
Deal found 22/5RM 1,363
Mon 6/711:45
NRT
-
BKI
1 stop8h 35m
Royal Brunei Airlines
Sun 12/721:00
BKI
-
NRT
1 stop9h 30m
Royal Brunei Airlines
Deal found 25/5RM 1,391
Sun 5/711:45
NRT
-
BKI
1 stop9h 25m
Royal Brunei Airlines
Sun 12/721:00
BKI
-
NRT
1 stop9h 30m
Royal Brunei Airlines
Deal found 23/5RM 1,493
Fri 26/615:30
NRT
-
BKI
1 stop21h 35m
XiamenAir
Thu 2/713:05
BKI
-
NRT
1 stop23h 50m
XiamenAir
Deal found 24/5RM 1,509
Wed 1/715:30
NRT
-
BKI
1 stop21h 35m
XiamenAir
Sat 4/713:05
BKI
-
NRT
1 stop23h 50m
XiamenAir
Deal found 25/5RM 1,525
Mon 22/602:20
HND
-
BKI
1 stop19h 40m
Scoot
Wed 24/609:50
BKI
-
HND
1 stop14h 15m
Scoot
Deal found 24/5RM 1,572
Wed 24/602:20
HND
-
BKI
1 stop19h 40m
Scoot
Thu 2/712:15
BKI
-
HND
1 stop11h 50m
Scoot
Deal found 25/5RM 1,604
Sun 18/1014:45
NRT
-
BKI
1 stop28h 35m
China Southern
Thu 22/1019:20
BKI
-
NRT
1 stop17h 20m
China Southern
Deal found 24/5RM 1,616
Sun 18/1015:40
HND
-
BKI
1 stop27h 40m
China Southern
Thu 22/1019:20
BKI
-
HND
1 stop18h 00m
China Southern
Deal found 24/5RM 1,620
Sun 5/702:20
HND
-
BKI
1 stop18h 10m
Scoot
Thu 9/712:15
BKI
-
HND
1 stop11h 50m
Scoot
Deal found 22/5RM 1,655
Sat 22/802:20
HND
-
BKI
1 stop11h 45m
Scoot
Wed 26/809:50
BKI
-
HND
1 stop14h 15m
Scoot
Deal found 22/5RM 1,691
Fri 19/614:45
NRT
-
BKI
1 stop28h 35m
China Southern
Thu 25/619:20
BKI
-
NRT
1 stop17h 20m
China Southern
Deal found 26/5RM 1,707

Find flight deals from Tokyo to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Tokyo (TYO) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 26 May 2026.

Round-trip from

RM 1,363

One-way from

RM 770
XiamenAir
  • XiamenAir
  • 6/7-9/7
  • 2 total stops
  • 45h 25m total
  • Tokyo to Kota Kinabalu
Search Deals
Scoot
  • Scoot
  • 12/9
  • 1 total stop
  • 12h 25m total
  • Tokyo to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Tokyo to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 26 May 2026.
Use the filters below to find and compare flights from Tokyo to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Mon 6/7

15:30-12:05

1 stop21h 35m

Kota Kinabalu

Thu 9/7

13:05-13:55

1 stop23h 50m

RM 1,363
Fastest return journey

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Mon 6/7

11:45-19:20

1 stop8h 35m

Kota Kinabalu

Sun 12/7

21:00-07:30

1 stop9h 30m

RM 1,391

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sun 5/7

11:45-20:10

1 stop9h 25m

Kota Kinabalu

Sun 12/7

21:00-07:30

1 stop9h 30m

RM 1,493

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sun 18/10

14:45-18:20

1 stop28h 35m

Kota Kinabalu

Thu 22/10

19:20-13:40

1 stop17h 20m

RM 1,616

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Sun 18/10

15:40-18:20

1 stop27h 40m

Kota Kinabalu

Thu 22/10

19:20-14:20

1 stop18h 00m

RM 1,620

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Fri 19/6

15:40-18:20

1 stop27h 40m

Kota Kinabalu

Thu 25/6

19:20-19:55

1 stop23h 35m

RM 1,711

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Mon 6/7

08:20-19:30

1 stop12h 10m

Kota Kinabalu

Thu 9/7

12:15-20:00

2 stops30h 45m

RM 1,722

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Thu 11/6

21:15-12:55

2 stops16h 40m

Kota Kinabalu

Mon 29/6

09:50-07:05

1 stop20h 15m

RM 1,801

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Wed 1/7

10:00-22:25

2 stops13h 25m

Kota Kinabalu

Fri 3/7

00:35-10:35

1 stop9h 00m

RM 1,853

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Tue 23/6

02:20-19:30

1 stop18h 10m

Kota Kinabalu

Wed 1/7

20:30-01:05

1 stop27h 35m

RM 1,873

Flights are sorted by cheapest return flights first.

Deals found on 22/5

Showing 1-10 of 36 resultsSorted by cheapest first
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Best time to book a flight from Tokyo to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Tokyo with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Tokyo to Kota Kinabalu

What’s the top stopover airport for flights from Tokyo to Kota Kinabalu?

Share of one-stop return flights from Tokyo to Kota Kinabalu chosen by Cheapflights users in the past 12 months, using the same stopover each way.

Kuala Lumpur (KUL) – chosen by Cheapflights users on 83% of one-stop itineraries from Tokyo to Kota Kinabalu on Cheapflights.

What’s the cheapest stopover airport for flights from Tokyo to Kota Kinabalu?

Average return fare for one-stop flights from Tokyo to Kota Kinabalu, chosen by Cheapflights users in the past 12 months, with the same stopover each way.

Incheon (ICN) is the most affordable one-stop option, with an average return flight price of RM 1,537.

What’s the fastest stopover option from Tokyo to Kota Kinabalu?

Shortest average travel time for one-stop one-way flights from Tokyo to Kota Kinabalu, based on itineraries clicked by Cheapflights users over the past 12 months, grouped by stopover airport.

Flights via Incheon (ICN) have the shortest average one-way travel time for one-stop routes: 11h 35m.

Which airport typically offers the quickest stopover for flights from Tokyo to Kota Kinabalu?

Average stopover duration for one-stop one-way flights from Tokyo to Kota Kinabalu, chosen by Cheapflights users in the last 12 months, grouped by stopover airport.

Flights via Kuala Lumpur (KUL) offer the fastest connection on this route, with an average stopover time of 2h 53m.

How often are flights from Tokyo to Kota Kinabalu delayed?

About 0% of weekly flights between Tokyo and Kota Kinabalu have experienced delays in the past year, with the average delay time being 0 minutes.

What is the most punctual flight time for Tokyo to Kota Kinabalu flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the morning tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Tuesday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.

Related info for your journey

Find useful and relevant information for your journey from Tokyo to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Tokyo?

    If you book a flight to Kota Kinabalu from Tokyo, you will be flying to Kota Kinabalu, which is the city’s only airport. Kota Kinabalu (BKI) is located 5.8 km from the centre of Kota Kinabalu. There are 0 flights from Tokyo to Kota Kinabalu per day from 0 different airlines.

  • How long is the flight from Tokyo to Kota Kinabalu?

    Airlines like XiamenAir, Royal Brunei Airlines, and China Southern fly from Tokyo to Kota Kinabalu in about 8h 35m. The time it takes to get you to your destination can typically vary by up to 20h. Tokyo and Kota Kinabalu are separated by a distance of 4142 km. Both multi-stop and direct flights can be found to your destination and back.

  • What are the cheapest airlines to fly from Tokyo to Kota Kinabalu one-way?

    To fly one-way, consider booking your trip with Scoot, which is currently one of the cheapest options available, starting at RM 589. Jeju Air flights start at RM 790 while deals on Royal Brunei Airlines start at RM 1,038 one-way.

  • Can I find deals for flights from Tokyo to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Tokyo to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Tokyo to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Tokyo to Kota Kinabalu.

  • Can I find deals for business class flights from Tokyo to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Tokyo to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Tokyo to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Narita to Kota Kinabalu flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Tokyo to Kota Kinabalu?

Cheapflights helps you search for flights from Tokyo to Kota Kinabalu via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Tokyo to Kota Kinabalu?

Millions of users choose and trust Cheapflights to book the best flight deals from Tokyo to Kota Kinabalu for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Tokyo to Kota Kinabalu with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Tokyo to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Tokyo to Kota Kinabalu become cheaper?

Not ready to book yet? You can track prices for flights from Tokyo to Kota Kinabalu on Cheapflights with our Price Alert feature and get notified when better prices are available.

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