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Cheap flights from Tokyo to Kota Kinabalu from RM 855

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 29/8. Fares are subject to change and may not be available on all flights or dates of travel.
TYO — BKI
11 Sep — 18 Sep1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Tokyo to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Tokyo to Kota Kinabalu
Explore the most affordable flight options available from Tokyo to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 12 August 2026.

Wed 2/916:55 -
1 stop29h 50m
Wed 9/922:50 -
1 stop21h 05m
Deal found 12/8RM 1,489
Thu 3/917:10 -
1 stop29h 35m
Sun 6/901:30 -
1 stop18h 50m
Deal found 8/8RM 1,497
Thu 3/916:55 -
1 stop29h 50m
Sat 5/922:50 -
1 stop13h 00m
Deal found 9/8RM 1,501
Wed 2/910:55 -
1 stop11h 50m
Thu 10/922:50 -
1 stop12h 10m
Deal found 10/8RM 1,505
Sat 5/913:00 -
1 stop12h 30m
Thu 10/922:50 -
1 stop12h 10m
Deal found 10/8RM 1,522
Fri 4/913:00 -
1 stop12h 30m
Thu 10/922:50 -
1 stop21h 05m
Deal found 11/8RM 1,546
Tue 1/919:55 -
1 stop28h 35m
Tue 8/901:40 -
1 stop11h 10m
Deal found 10/8RM 1,562
Fri 4/913:00 -
1 stop9h 45m
Mon 7/922:50 -
1 stop16h 05m
Deal found 10/8RM 1,607
Wed 26/819:55 -
1 stop28h 35m
Tue 1/901:40 -
1 stop32h 00m
Deal found 10/8RM 1,611
Mon 7/915:30 -
1 stop21h 35m
Sat 12/913:05 -
1 stop23h 50m
Deal found 10/8RM 1,616
Fri 28/819:55 -
1 stop28h 35m
Tue 1/901:15 -
1 stop17h 30m
Deal found 10/8RM 1,620
Fri 28/819:55 -
1 stop28h 35m
Wed 2/901:40 -
1 stop10h 15m
Deal found 10/8RM 1,640

Find flight deals from Tokyo to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Tokyo (TYO) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 12 August 2026.

Round-trip from

RM 1,489

One-way from

RM 855
China Eastern
  • China Eastern
  • 2/9-9/9
  • 2 total stops
  • 50h 55m total
  • Tokyo to Kota Kinabalu
Search Deals
Jeju Air
  • Jeju Air
  • 29/8
  • 1 total stop
  • 12h 50m total
  • Tokyo to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Tokyo to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 12 August 2026.
Use the filters below to find and compare flights from Tokyo to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Wed 2/9

16:55-21:45

1 stop29h 50m

Kota Kinabalu

Wed 9/9

22:50-20:55

1 stop21h 05m

RM 1,489

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Thu 3/9

10:55-21:45

1 stop11h 50m

Kota Kinabalu

Mon 7/9

22:50-20:55

1 stop21h 05m

RM 1,501

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Fri 4/9

13:00-00:30

1 stop12h 30m

Kota Kinabalu

Thu 10/9

22:50-20:55

1 stop21h 05m

RM 1,546

TokyoKota Kinabalu

HND Tokyo Haneda - BKI Kota Kinabalu

HNDBKI

Tokyo Haneda

Thu 3/9

08:40-00:30

1 stop16h 50m

Kota Kinabalu

Fri 4/9

01:30-21:20

1 stop18h 50m

RM 1,873

TokyoKota Kinabalu

HND Tokyo Haneda - BKI Kota Kinabalu

HNDBKI

Tokyo Haneda

Mon 7/9

08:40-00:30

1 stop16h 50m

Kota Kinabalu

Fri 11/9

01:30-21:20

1 stop18h 50m

RM 1,902

TokyoKota Kinabalu

HND Tokyo Haneda - BKI Kota Kinabalu

HNDBKI

Tokyo Haneda

Fri 4/9

08:40-21:45

1 stop14h 05m

Kota Kinabalu

Mon 7/9

01:30-21:20

1 stop18h 50m

RM 1,906

TokyoKota Kinabalu

HND Tokyo Haneda - BKI Kota Kinabalu

HNDBKI

Tokyo Haneda

Fri 4/9

08:40-00:30

1 stop16h 50m

Kota Kinabalu

Thu 10/9

22:50-21:20

1 stop21h 30m

RM 1,918
Fastest return journey

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Thu 3/9

07:40-23:30

2 stops16h 50m

Kota Kinabalu

Fri 4/9

01:40-12:00

1 stop9h 20m

RM 2,045

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Fri 4/9

15:30-12:05

1 stop21h 35m

Kota Kinabalu

Thu 10/9

13:05-13:45

2 stops23h 40m

RM 2,045

TokyoKota Kinabalu

NRT Tokyo Narita - BKI Kota Kinabalu

NRTBKI

Tokyo Narita

Thu 3/9

07:40-22:25

2 stops15h 45m

Kota Kinabalu

Mon 7/9

07:25-09:05

2 stops24h 40m

RM 2,098

Flights are sorted by cheapest return flights first.

Deals found on 7/8

Showing 1-10 of 43 resultsSorted by cheapest first
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Best time to book a flight from Tokyo to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Tokyo with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Tokyo to Kota Kinabalu

How often are flights from Tokyo to Kota Kinabalu delayed?

About 0% of weekly flights between Tokyo and Kota Kinabalu have experienced delays in the past year, with the average delay time being 0 minutes.

What is the most punctual flight time for Tokyo to Kota Kinabalu flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the morning tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Tuesday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.

Related info for your journey

Find useful and relevant information for your journey from Tokyo to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Tokyo?

    If you book a flight to Kota Kinabalu from Tokyo, you will be flying to Kota Kinabalu, which is the city’s only airport. Kota Kinabalu (BKI) is located 5.8 km from the centre of Kota Kinabalu. There are 0 flights from Tokyo to Kota Kinabalu per day from 0 different airlines.

  • How long is the flight from Tokyo to Kota Kinabalu?

    Airlines like China Eastern and XiamenAir fly from Tokyo to Kota Kinabalu in about 21h 35m. The time it takes to get you to your destination can typically vary by up to 8h 15m. Tokyo and Kota Kinabalu are separated by a distance of 4142 km. Both multi-stop and direct flights can be found to your destination and back.

  • Can I find deals for flights from Tokyo to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Tokyo to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Tokyo to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Tokyo to Kota Kinabalu.

  • Can I find deals for business class flights from Tokyo to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Tokyo to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Tokyo to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Narita to Kota Kinabalu flights

Fly with Cheapflights

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How does Cheapflights help users find flights from Tokyo to Kota Kinabalu?

Cheapflights helps you search for flights from Tokyo to Kota Kinabalu via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Tokyo to Kota Kinabalu?

Millions of users choose and trust Cheapflights to book the best flight deals from Tokyo to Kota Kinabalu for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Tokyo to Kota Kinabalu with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Tokyo to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Tokyo to Kota Kinabalu become cheaper?

Not ready to book yet? You can track prices for flights from Tokyo to Kota Kinabalu on Cheapflights with our Price Alert feature and get notified when better prices are available.

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