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Cheap flights from Tokyo to Kota Kinabalu from RM 900

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 15/10. Fares are subject to change and may not be available on all flights or dates of travel.
TYO — BKI
13 Aug — 20 Aug1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Tokyo to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Tokyo to Kota Kinabalu
Explore the most affordable flight options available from Tokyo to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 14 July 2026.

Sun 8/1115:30
NRT
-
BKI
1 stop21h 35m
XiamenAir
Sat 14/1113:05
BKI
-
NRT
1 stop23h 35m
XiamenAir
Deal found 12/7RM 1,478
Wed 11/1115:30
NRT
-
BKI
1 stop21h 35m
XiamenAir
Sun 15/1113:05
BKI
-
NRT
1 stop23h 35m
XiamenAir
Deal found 12/7RM 1,486
Wed 11/1110:45
HND
-
BKI
1 stop32h 15m
China Southern
Sun 15/1119:05
BKI
-
HND
1 stop23h 55m
China Southern
Deal found 12/7RM 1,686
Mon 30/1115:05
HND
-
BKI
1 stop27h 55m
China Southern
Sat 5/1219:05
BKI
-
HND
1 stop23h 55m
China Southern
Deal found 12/7RM 1,706
Mon 30/1114:20
NRT
-
BKI
1 stop28h 40m
China Southern
Sat 5/1219:05
BKI
-
NRT
1 stop17h 10m
China Southern
Deal found 12/7RM 1,706
Sun 8/1115:05
HND
-
BKI
1 stop27h 55m
China Southern
Sat 14/1119:05
BKI
-
HND
1 stop23h 55m
China Southern
Deal found 12/7RM 1,710
Thu 20/822:40
NRT
-
BKI
1 stop24h 45m
Multiple Airlines
Tue 25/801:15
BKI
-
NRT
1 stop16h 10m
Multiple Airlines
Deal found 9/7RM 1,775
Thu 20/806:00
HND
-
BKI
1 stop17h 25m
Multiple Airlines
Tue 25/801:15
BKI
-
HND
1 stop23h 05m
Multiple Airlines
Deal found 9/7RM 1,796
Sat 22/806:00
HND
-
BKI
1 stop17h 25m
Multiple Airlines
Tue 25/801:15
BKI
-
HND
1 stop23h 05m
Multiple Airlines
Deal found 9/7RM 1,836
Thu 27/812:30
NRT
-
BKI
1 stop10h 55m
Multiple Airlines
Wed 2/901:15
BKI
-
NRT
1 stop12h 30m
Multiple Airlines
Deal found 13/7RM 1,848
Wed 19/822:40
NRT
-
BKI
1 stop24h 45m
Multiple Airlines
Thu 27/801:15
BKI
-
NRT
1 stop18h 25m
Multiple Airlines
Deal found 13/7RM 1,893
Sat 22/821:15
NRT
-
BKI
2 stops16h 50m
Scoot
Wed 26/820:30
BKI
-
NRT
2 stops22h 30m
Scoot
Deal found 9/7RM 1,897

Find flight deals from Tokyo to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Tokyo (TYO) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 14 July 2026.

Round-trip from

RM 1,478

One-way from

RM 900
XiamenAir
  • XiamenAir
  • 8/11-14/11
  • 2 total stops
  • 45h 10m total
  • Tokyo to Kota Kinabalu
Search Deals
15/10
  • 15/10
  • 1 total stop
  • 31h 05m total
  • Tokyo to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Tokyo to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 14 July 2026.
Use the filters below to find and compare flights from Tokyo to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Sat 22/8

06:00-22:25

1 stop17h 25m

Kota Kinabalu

Tue 25/8

01:15-01:20

1 stop23h 05m

RM 1,836

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Wed 19/8

22:40-22:25

1 stop24h 45m

Kota Kinabalu

Thu 27/8

01:15-20:40

1 stop18h 25m

RM 1,893

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Thu 20/8

08:20-08:30

1 stop25h 10m

Kota Kinabalu

Wed 26/8

20:30-20:00

2 stops22h 30m

RM 1,922

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sat 22/8

08:20-13:05

1 stop29h 45m

Kota Kinabalu

Wed 26/8

09:50-20:00

2 stops33h 10m

RM 1,922

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sat 22/8

14:05-23:30

1 stop10h 25m

Kota Kinabalu

Fri 28/8

01:15-16:05

1 stop13h 50m

RM 2,024

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Wed 19/8

02:20-08:30

1 stop31h 10m

Kota Kinabalu

Tue 25/8

01:30-16:00

2 stops13h 30m

RM 2,174

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sat 22/8

21:15-13:05

2 stops16h 50m

Kota Kinabalu

Sat 29/8

20:45-11:15

2 stops13h 30m

RM 2,280

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Wed 19/8

17:35-00:30

2 stops31h 55m

Kota Kinabalu

Fri 28/8

20:00-15:50

1 stop18h 50m

RM 2,565

TokyoKota Kinabalu

HND - BKI

HNDBKI

Tokyo Haneda

Thu 24/12

01:55-00:30

1 stop23h 35m

Kota Kinabalu

Tue 29/12

20:00-00:55

1 stop27h 55m

RM 2,691

TokyoKota Kinabalu

NRT - BKI

NRTBKI

Tokyo Narita

Sat 8/8

12:30-11:15

2 stops23h 45m

Kota Kinabalu

Fri 21/8

09:30-20:00

2 stops33h 30m

RM 2,756

Flights are sorted by cheapest return flights first.

Deals found on 13/7

Showing 1-10 of 33 resultsSorted by cheapest first
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Best time to book a flight from Tokyo to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Tokyo with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Tokyo to Kota Kinabalu

How often are flights from Tokyo to Kota Kinabalu delayed?

About 0% of weekly flights between Tokyo and Kota Kinabalu have experienced delays in the past year, with the average delay time being 0 minutes.

What is the most punctual flight time for Tokyo to Kota Kinabalu flights?

Historically, flights departing in the morning are less likely to be delayed, whereas flights leaving in the morning tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Tuesday tends to have the lowest number of delays on this route, whereas Saturday has historically faced a higher average of delays compared to other days of the week.

Related info for your journey

Find useful and relevant information for your journey from Tokyo to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Tokyo?

    If you book a flight to Kota Kinabalu from Tokyo, you will be flying to Kota Kinabalu, which is the city’s only airport. Kota Kinabalu (BKI) is located 5.8 km from the centre of Kota Kinabalu. There are 0 flights from Tokyo to Kota Kinabalu per day from 0 different airlines.

  • How long is the flight from Tokyo to Kota Kinabalu?

    Airlines like Scoot and China Eastern fly from Tokyo to Kota Kinabalu in about 25h 10m. The time it takes to get you to your destination can typically vary by up to 6h 45m. Tokyo and Kota Kinabalu are separated by a distance of 4142 km. Both multi-stop and direct flights can be found to your destination and back.

  • Can I find deals for flights from Tokyo to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Tokyo to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Tokyo to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Tokyo to Kota Kinabalu.

  • Can I find deals for business class flights from Tokyo to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Tokyo to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Tokyo to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Narita to Kota Kinabalu flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Tokyo to Kota Kinabalu?

Cheapflights helps you search for flights from Tokyo to Kota Kinabalu via 900+ travel sites so you don’t have to. After performing a flight search, users can also filter their flight selection by filtering for price, number of stops, airlines, and so on.

Why should you use Cheapflights to find cheap flight tickets from Tokyo to Kota Kinabalu?

Millions of users choose and trust Cheapflights to book the best flight deals from Tokyo to Kota Kinabalu for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Tokyo to Kota Kinabalu with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Tokyo to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Tokyo to Kota Kinabalu become cheaper?

Not ready to book yet? You can track prices for flights from Tokyo to Kota Kinabalu on Cheapflights with our Price Alert feature and get notified when better prices are available.

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