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Cheap flights from Kota Kinabalu to Japan from RM 693

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 22/6. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — FUK
4 May — 11 May1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Japan
Explore the most affordable flight options available from Kota Kinabalu to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 4 April 2026.

Fri 15/501:15
BKI
-
NRT
1 stop18h 25m
HK Express
Sat 23/521:35
NRT
-
BKI
1 stop27h 55m
HK Express
Deal found 31/3RM 1,422
Tue 23/609:05
BKI
-
HND
1 stop12h 30m
Multiple Airlines
Thu 25/602:20
HND
-
BKI
1 stop18h 25m
Multiple Airlines
Deal found 3/4RM 1,442
Sat 3/1007:30
BKI
-
HND
1 stop14h 05m
Multiple Airlines
Mon 12/1002:20
HND
-
BKI
1 stop31h 30m
Multiple Airlines
Deal found 1/4RM 1,499
Wed 1/709:50
BKI
-
NRT
1 stop20h 15m
Multiple Airlines
Wed 8/711:10
NRT
-
BKI
1 stop15h 10m
Multiple Airlines
Deal found 31/3RM 1,503
Sat 16/520:45
BKI
-
HND
1 stop27h 20m
Scoot
Fri 22/502:20
HND
-
BKI
1 stop18h 25m
Scoot
Deal found 31/3RM 1,527
Mon 6/709:50
BKI
-
KIX
1 stop27h 45m
Multiple Airlines
Sun 12/707:45
KIX
-
BKI
2 stops18h 35m
Multiple Airlines
Deal found 31/3RM 1,543
Sun 7/612:15
BKI
-
KIX
1 stop24h 50m
Multiple Airlines
Sat 13/611:05
KIX
-
BKI
1 stop23h 30m
Multiple Airlines
Deal found 31/3RM 1,571
Thu 14/501:15
BKI
-
HND
1 stop20h 40m
HK Express
Fri 22/506:35
HND
-
BKI
1 stop18h 55m
HK Express
Deal found 30/3RM 1,575
Sat 16/501:15
BKI
-
KIX
1 stop10h 30m
HK Express
Sun 24/514:25
KIX
-
BKI
1 stop11h 05m
HK Express
Deal found 2/4RM 1,579
Fri 1/507:45
BKI
-
NRT
2 stops29h 00m
Multiple Airlines
Fri 8/521:15
NRT
-
BKI
2 stops23h 30m
Multiple Airlines
Deal found 1/4RM 1,591
Wed 20/509:50
BKI
-
HND
1 stop14h 15m
Scoot
Thu 21/502:20
HND
-
BKI
1 stop18h 25m
Scoot
Deal found 3/4RM 1,603
Thu 14/501:15
BKI
-
KIX
1 stop11h 15m
HK Express
Fri 22/514:25
KIX
-
BKI
1 stop11h 05m
HK Express
Deal found 30/3RM 1,611

Find flight deals from Kota Kinabalu to Japan

Keep the following information in mind while searching for Kota Kinabalu to Japan flight deals. Data was last updated 4 April 2026.

Round-trip from

RM 1,422

One-way from

RM 693

Popular in

December

Cheapest in

July

Average price

RM 1,499

Good round-trip deal

RM 1,774 or less

Good one-way deal

RM 1,346 or less
HK Express
  • HK Express
  • 15/5-23/5
  • 2 total stops
  • 46h 20m total
  • Kota Kinabalu to Japan
Search Deals
22/6
  • 22/6
  • 1 total stop
  • 22h 15m total
  • Kota Kinabalu to Japan
Search Deals
Highest demand for flights based on searches. 5% potential increase in price (RM 416 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 96 potential savings vs. average return price).
Search Deals
Average for round-trip flights in April 2026
Search Deals
Price to beat on a round-trip flight from Kota Kinabalu to Japan.
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Japan.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 4 April 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Japan that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Wed 1/7

09:50-06:10

2 stops19h 20m

Tokyo Narita

Wed 8/7

11:10-01:20

1 stop15h 10m

RM 1,527

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 23/6

07:50-22:35

3 stops37h 45m

Tokyo Haneda

Thu 25/6

02:20-19:45

1 stop18h 25m

RM 1,567

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Thu 14/5

01:15-22:55

1 stop20h 40m

Tokyo Haneda

Fri 22/5

06:35-00:30

1 stop18h 55m

RM 1,575

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Mon 20/7

06:50-14:35

2 stops30h 45m

Osaka Kansai Intl

Sun 26/7

22:25-19:30

2 stops22h 05m

RM 1,631

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 19/5

07:30-01:05

3 stops40h 35m

Tokyo Haneda

Mon 25/5

02:20-08:50

1 stop31h 30m

RM 1,732

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Sun 17/5

05:20-01:05

2 stops18h 45m

Tokyo Haneda

Sat 23/5

02:20-08:50

1 stop31h 30m

RM 1,740

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Fri 1/5

06:45-01:05

3 stops41h 20m

Tokyo Haneda

Thu 7/5

02:20-19:45

1 stop18h 25m

RM 1,789

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 8/6

01:30-16:00

2 stops37h 30m

Tokyo Haneda

Wed 10/6

20:00-00:30

1 stop29h 30m

RM 1,889

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Wed 15/4

09:50-01:05

1 stop14h 15m

Tokyo Haneda

Thu 16/4

06:35-15:55

1 stop10h 20m

RM 1,946

Kota KinabaluSapporo

BKI - CTS

BKICTS

Kota Kinabalu

Sun 17/5

05:20-18:20

3 stops36h 00m

Sapporo Chitose

Sun 24/5

20:50-19:30

2 stops23h 40m

RM 1,950

Flights are sorted by cheapest return flights first.

Deals found on 31/3

Showing 1-10 of 56 resultsSorted by cheapest first
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Best time to book a flight from Kota Kinabalu to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Japan

What is the cheapest month to book a flight from Kota Kinabalu to Japan?

Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 773). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,378). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from BKI to JP?

Find hourly flight availability from Kota Kinabalu to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 4 April 2026.

When flying from Kota Kinabalu to Japan, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

How often are flights from Kota Kinabalu to Japan delayed?

About 8% of weekly flights between Kota Kinabalu and Japan have experienced delays in the past year, with the average delay time being 39 minutes.

What is the most punctual flight time for Kota Kinabalu to Japan flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Japan flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 9% of flights being delayed.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated 4 April 2026.
See what other customers who have flown with HK Express,China Eastern, andPhilippines AirAsia from Kota Kinabalu to Japan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9
HK Express
7.3
Good
44 reviews
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9
China Eastern
7.2
Good
200 reviews
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9
Philippines AirAsia
6.8
Okay
126 reviews
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9
AirAsia
6.8
Okay
230 reviews
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9
Scoot
6.7
Okay
322 reviews
HK Express
7.3
Good
44 reviews
Check prices

Entertainment

5.4

Overall

7.3

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Japan?

    Most people fly from Kota Kinabalu (BKI) if they book a flight from Kota Kinabalu to Japan. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city centre.

  • How popular is this Kota Kinabalu to Japan flight route?

    This flight path from Kota Kinabalu to Japan was viewed by 84 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Kota Kinabalu to Japan?

    There are many flights that can get you from Kota Kinabalu to Japan in 18h 25m. Fly via HK Express, Batik Air, or China Eastern to get the fastest option. The distance from Kota Kinabalu to Japan is about 4142 km. This flight may include one or multiple stops.

  • What are the cheapest airlines to fly from Kota Kinabalu to Japan one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at RM 471. Scoot flights start at RM 495 while deals on HK Express start at RM 536 one-way.

  • What are the most popular routes from Kota Kinabalu to Japan?

    The most popular flight routes from Kota Kinabalu to Japan are Kota Kinabalu - Tokyo Narita, Kota Kinabalu - Tokyo Haneda and Kota Kinabalu - Osaka Kansai Intl.

  • What are the cheapest flights from Kota Kinabalu to Japan?

    On average you can expect to pay RM 1,632 for a flight from Kota Kinabalu to Japan. The cheapest flight overall is RM 1,109 while the most popular route, (Kota Kinabalu - Tokyo Narita) is currently priced at RM 1,692.

  • Can I find deals for flights from Kota Kinabalu to Japan that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Japan flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Japan.

  • Can I find deals for business class flights from Kota Kinabalu to Japan?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Japan?

    Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 773). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,378). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top 8 airlines flying from Kota Kinabalu to Japan

Discover the top 8 airlines that operate flights from Kota Kinabalu to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 4 April 2026.
AirlineCheapestAverageFlexibilityOn-time
China EasternCheapestRM 811AverageRM 1,734FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Philippines AirAsiaCheapestRM 1,023AverageRM 1,174FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
HK ExpressCheapestRM 1,055AverageRM 1,513FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ScootCheapestRM 1,188AverageRM 1,740FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
AirAsiaCheapestRM 1,435AverageRM 1,962FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
T'way AirCheapestRM 1,457AverageRM 1,773FlexibilityNo cancel feeOn-time88%
Search T'way Air flights
Malaysia AirlinesCheapestRM 1,656AverageRM 2,166FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
Batik AirCheapestRM 1,821AverageRM 1,885FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Japan?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Kota Kinabalu to Japan. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Japan?

Millions of users choose and trust Cheapflights to book the best flight deals from Kota Kinabalu to Japan for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Kota Kinabalu to Japan with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Kota Kinabalu to Japan, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Japan become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Japan from Kota Kinabalu today and book when prices fit your budget.

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