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Cheap flights from Kota Kinabalu to Japan from RM 626

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 13/7. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — FUK
15 Apr — 22 Apr1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Japan
Explore the most affordable flight options available from Kota Kinabalu to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 16 March 2026.

Mon 29/607:30
BKI
-
HND
1 stop14h 05m
Multiple Airlines
Mon 6/723:50
HND
-
BKI
1 stop18h 55m
Multiple Airlines
Deal found 15/3RM 1,216
Sun 14/609:05
BKI
-
HND
1 stop12h 30m
Multiple Airlines
Sun 21/623:50
HND
-
BKI
1 stop11h 40m
Multiple Airlines
Deal found 10/3RM 1,224
Tue 1/912:15
BKI
-
KIX
1 stop25h 20m
Scoot
Wed 30/915:50
KIX
-
BKI
1 stop20h 25m
Scoot
Deal found 12/3RM 1,243
Sun 19/412:15
BKI
-
KIX
1 stop24h 50m
Scoot
Wed 30/915:50
KIX
-
BKI
1 stop20h 25m
Scoot
Deal found 12/3RM 1,271
Sun 19/412:15
BKI
-
HND
1 stop11h 50m
Scoot
Tue 29/902:20
HND
-
BKI
1 stop18h 10m
Scoot
Deal found 12/3RM 1,346
Mon 15/601:15
BKI
-
KIX
2 stops15h 45m
Multiple Airlines
Tue 23/615:50
KIX
-
BKI
1 stop28h 40m
Multiple Airlines
Deal found 13/3RM 1,357
Sun 19/412:15
BKI
-
KIX
1 stop24h 50m
Multiple Airlines
Wed 30/919:40
KIX
-
BKI
2 stops26h 20m
Multiple Airlines
Deal found 12/3RM 1,397
Fri 24/701:45
BKI
-
NRT
1 stop10h 15m
Multiple Airlines
Fri 31/713:45
NRT
-
BKI
1 stop12h 35m
Multiple Airlines
Deal found 11/3RM 1,440
Mon 29/609:50
BKI
-
NRT
1 stop20h 15m
Scoot
Mon 6/708:20
NRT
-
BKI
1 stop12h 10m
Scoot
Deal found 15/3RM 1,444
Tue 1/912:15
BKI
-
HND
1 stop11h 50m
Scoot
Tue 29/902:20
HND
-
BKI
1 stop18h 10m
Scoot
Deal found 12/3RM 1,444
Sun 19/412:15
BKI
-
NRT
1 stop17h 50m
Scoot
Wed 30/908:20
NRT
-
BKI
1 stop12h 10m
Scoot
Deal found 12/3RM 1,456
Sun 19/412:15
BKI
-
HND
3 stops33h 20m
Multiple Airlines
Tue 29/902:20
HND
-
BKI
1 stop18h 10m
Multiple Airlines
Deal found 12/3RM 1,456

Find flight deals from Kota Kinabalu to Japan

Keep the following information in mind while searching for Kota Kinabalu to Japan flight deals. Data was last updated 16 March 2026.

Round-trip from

RM 1,216

One-way from

RM 626

Popular in

December

Cheapest in

July

Average price

RM 1,818

Good one-way deal

RM 1,491 or less
29/6-6/7
  • 29/6-6/7
  • 2 total stops
  • 33h 00m total
  • Kota Kinabalu to Japan
Search Deals
Scoot
  • Scoot
  • 13/7
  • 1 total stop
  • 17h 05m total
  • Kota Kinabalu to Japan
Search Deals
Highest demand for flights based on searches. 6% potential increase in price (RM 430 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 102 potential savings vs. average return price).
Search Deals
Average for round-trip flights in March 2026
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Japan.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 16 March 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Japan that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Fri 24/7

01:45-13:00

1 stop10h 15m

Tokyo Narita

Fri 31/7

13:45-01:20

1 stop12h 35m

RM 1,440
Fastest return journey

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Wed 29/4

00:35-10:35

1 stop9h 00m

Tokyo Narita

Thu 7/5

13:15-23:30

1 stop11h 15m

RM 1,668

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Wed 8/4

20:30-01:05

1 stop27h 35m

Tokyo Haneda

Wed 15/4

13:30-00:30

1 stop12h 00m

RM 1,711

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Tue 14/4

12:15-07:05

1 stop17h 50m

Tokyo Narita

Tue 21/4

08:20-08:50

1 stop25h 30m

RM 1,715

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 27/4

09:50-22:35

3 stops35h 45m

Tokyo Haneda

Mon 4/5

06:35-00:30

1 stop18h 55m

RM 1,723

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Sat 13/6

21:35-09:50

1 stop11h 15m

Osaka Kansai Intl

Sat 20/6

11:05-21:00

1 stop10h 55m

RM 1,794

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Wed 27/5

20:30-01:00

2 stops27h 30m

Tokyo Haneda

Mon 1/6

02:00-08:50

2 stops31h 50m

RM 1,794

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 20/4

20:30-01:05

1 stop27h 35m

Tokyo Haneda

Sun 26/4

06:35-08:50

2 stops27h 15m

RM 1,833

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Wed 27/5

13:05-13:40

1 stop23h 35m

Tokyo Narita

Tue 2/6

08:20-08:50

1 stop25h 30m

RM 1,837

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 1/9

10:30-01:05

3 stops37h 35m

Tokyo Haneda

Tue 29/9

02:20-19:30

1 stop18h 10m

RM 1,837

Flights are sorted by cheapest return flights first.

Deals found on 12/3

Showing 1-10 of 53 resultsSorted by cheapest first
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Best time to book a flight from Kota Kinabalu to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Japan

What is the cheapest month to book a flight from Kota Kinabalu to Japan?

Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 755). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,346). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from BKI to JP?

Find hourly flight availability from Kota Kinabalu to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 16 March 2026.

When flying from Kota Kinabalu to Japan, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

Weekly flight availability from Kota Kinabalu to Japan

Explore weekly flight availability from Kota Kinabalu to Japan. Discover flights operating on different days of the week, giving you the flexibility to choose a travel day that best fits your plans. Compare info to find the most convenient option for your journey. Data last updated 16 March 2026.

The most flights from BKI to JP0 are scheduled on a Monday (1 on average). You will have fewer flight options on Monday, which is when the least amount of flights are scheduled (1 on average).

How often are flights from Kota Kinabalu to Japan delayed?

About 8% of weekly flights between Kota Kinabalu and Japan have experienced delays in the past year, with the average delay time being 39 minutes.

What is the most punctual flight time for Kota Kinabalu to Japan flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Japan flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 9% of flights being delayed.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated 16 March 2026.
See what other customers who have flown with HK Express,China Eastern, andPhilippines AirAsia from Kota Kinabalu to Japan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9
HK Express
7.3
Good
44 reviews
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9
China Eastern
7.2
Good
198 reviews
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9
Philippines AirAsia
6.8
Okay
125 reviews
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9
AirAsia
6.8
Okay
229 reviews
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9
Scoot
6.7
Okay
320 reviews
HK Express
7.3
Good
44 reviews
Check prices

Comfort

6.6

Crew

7.5

Entertainment

5.4

Overall

7.3

Boarding

7.4

Food

5.9

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Japan?

    Most people fly from Kota Kinabalu (BKI) if they book a flight from Kota Kinabalu to Japan. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city centre.

  • How popular is this Kota Kinabalu to Japan flight route?

    This flight path from Kota Kinabalu to Japan was viewed by 80 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Kota Kinabalu to Japan?

    There are many flights that can get you from Kota Kinabalu to Japan in 16h 35m. Fly via Scoot or Jin Air to get the fastest option. The distance from Kota Kinabalu to Japan is about 4806 km. This flight may include one or multiple stops.

  • What are the cheapest airlines to fly from Kota Kinabalu to Japan one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at RM 460. Scoot flights start at RM 484 while deals on HK Express start at RM 523 one-way.

  • What are the most popular routes from Kota Kinabalu to Japan?

    The most popular flight routes from Kota Kinabalu to Japan are Kota Kinabalu - Osaka Kansai Intl, Kota Kinabalu - Tokyo Narita and Kota Kinabalu - Sapporo Chitose.

  • Can I find deals for flights from Kota Kinabalu to Japan that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Japan flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Japan.

  • Can I find deals for business class flights from Kota Kinabalu to Japan?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Japan?

    Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 755). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,346). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top 10 airlines flying from Kota Kinabalu to Japan

Discover the top 10 airlines that operate flights from Kota Kinabalu to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 16 March 2026.
AirlineCheapestAverageFlexibilityOn-time
Jin AirCheapestRM 779AverageRM 1,976FlexibilityNo cancel feeOn-time78%
Search Jin Air flights
China EasternCheapestRM 793AverageRM 1,652FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Philippines AirAsiaCheapestRM 999AverageRM 1,146FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
HK ExpressCheapestRM 1,031AverageRM 1,478FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ScootCheapestRM 1,160AverageRM 1,699FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
AirAsiaCheapestRM 1,401AverageRM 1,950FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
T'way AirCheapestRM 1,423AverageRM 1,732FlexibilityNo cancel feeOn-time88%
Search T'way Air flights
Batik AirCheapestRM 1,557AverageRM 1,794FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights
Malaysia AirlinesCheapestRM 1,617AverageRM 2,128FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
China SouthernCheapestRM 1,898AverageRM 2,475FlexibilityNo cancel feeOn-time69%
Search China Southern flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Japan?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Kota Kinabalu to Japan. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Japan?

Millions of users choose and trust Cheapflights to book the best flight deals from Kota Kinabalu to Japan for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Kota Kinabalu to Japan with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Kota Kinabalu to Japan, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Japan become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Japan from Kota Kinabalu today and book when prices fit your budget.

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