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Cheap flights from Kota Kinabalu to Japan from RM 648

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 26/7. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — FUK
15 mai — 22 mai1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Japan
Explore the most affordable flight options available from Kota Kinabalu to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 15 abril 2026.

seg 22/620:30
BKI
-
KIX
1 stop17h 05m
Scoot
ter 30/615:50
KIX
-
BKI
1 stop18h 00m
Scoot
Deal found 12/4RM 1,375
ter 28/412:15
BKI
-
KIX
1 stop25h 20m
Scoot
seg 4/515:50
KIX
-
BKI
1 stop20h 25m
Scoot
Deal found 10/4RM 1,395
qui 1/1009:05
BKI
-
HND
1 stop12h 30m
Multiple Airlines
sex 16/1002:20
HND
-
BKI
1 stop18h 25m
Multiple Airlines
Deal found 12/4RM 1,442
seg 22/609:50
BKI
-
HND
1 stop14h 15m
Scoot
qui 25/602:20
HND
-
BKI
1 stop11h 35m
Scoot
Deal found 14/4RM 1,450
qui 18/600:30
BKI
-
NRT
1 stop14h 20m
Multiple Airlines
qui 25/608:20
NRT
-
BKI
1 stop13h 40m
Multiple Airlines
Deal found 14/4RM 1,466
seg 8/609:50
BKI
-
KIX
1 stop27h 45m
Multiple Airlines
seg 15/621:00
KIX
-
BKI
2 stops25h 00m
Multiple Airlines
Deal found 12/4RM 1,490
seg 22/618:45
BKI
-
KIX
2 stops18h 50m
Multiple Airlines
ter 30/615:50
KIX
-
BKI
1 stop28h 40m
Multiple Airlines
Deal found 12/4RM 1,494
seg 22/609:50
BKI
-
NRT
1 stop20h 15m
Scoot
sex 26/608:20
NRT
-
BKI
1 stop12h 25m
Scoot
Deal found 14/4RM 1,498
sex 1/520:45
BKI
-
KIX
1 stop16h 50m
Scoot
seg 4/515:50
KIX
-
BKI
1 stop20h 25m
Scoot
Deal found 10/4RM 1,506
qua 7/1010:10
BKI
-
HND
1 stop11h 25m
Multiple Airlines
ter 13/1002:20
HND
-
BKI
1 stop18h 10m
Multiple Airlines
Deal found 12/4RM 1,506
ter 28/412:15
BKI
-
KIX
1 stop25h 20m
Multiple Airlines
seg 4/515:50
KIX
-
BKI
2 stops30h 10m
Multiple Airlines
Deal found 10/4RM 1,521
sáb 2/507:25
BKI
-
KIX
1 stop11h 05m
Multiple Airlines
ter 5/515:50
KIX
-
BKI
1 stop18h 00m
Multiple Airlines
Deal found 12/4RM 1,525

Find flight deals from Kota Kinabalu to Japan

Keep the following information in mind while searching for Kota Kinabalu to Japan flight deals. Data was last updated 15 abril 2026.

Round-trip from

RM 1,375

One-way from

RM 648

Popular in

December

Cheapest in

July

Average price

RM 1,470

Good round-trip deal

RM 1,740 or less

Good one-way deal

RM 1,320 or less
Scoot
  • Scoot
  • 22/6-30/6
  • 2 total stops
  • 35h 05m total
  • Kota Kinabalu to Japan
Search Deals
26/7
  • 26/7
  • 2 total stops
  • 19h 25m total
  • Kota Kinabalu to Japan
Search Deals
Highest demand for flights based on searches. 5% potential increase in price (RM 397 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 93 potential savings vs. average return price).
Search Deals
Average for round-trip flights in April 2026
Search Deals
Price to beat on a round-trip flight from Kota Kinabalu to Japan.
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Japan.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 15 abril 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Japan that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

qui 1/10

09:05-22:35

1 stop12h 30m

Tokyo Haneda

sex 16/10

02:20-19:45

1 stop18h 25m

RM 1,442

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

ter 15/9

12:15-20:50

2 stops31h 35m

Tokyo Narita

ter 22/9

21:15-19:30

2 stops23h 15m

RM 1,604

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

sex 1/5

06:45-14:35

3 stops30h 50m

Osaka Kansai Intl

seg 4/5

15:50-11:15

1 stop20h 25m

RM 1,679

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

ter 15/9

07:25-00:45

1 stop16h 20m

Tokyo Haneda

seg 21/9

02:20-08:50

1 stop31h 30m

RM 1,755

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

qua 17/6

06:45-01:05

3 stops41h 20m

Tokyo Haneda

dom 21/6

02:20-19:30

1 stop18h 10m

RM 1,770

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

qua 7/10

05:20-06:10

3 stops23h 50m

Tokyo Narita

qua 14/10

08:20-14:15

2 stops30h 55m

RM 1,838

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

seg 20/7

22:50-22:35

1 stop22h 45m

Tokyo Haneda

qui 23/7

23:50-20:05

1 stop21h 15m

RM 1,861

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

sex 29/5

07:25-20:00

1 stop11h 35m

Tokyo Narita

sex 5/6

15:45-00:30

1 stop9h 45m

RM 1,897

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

seg 22/6

20:30-22:25

2 stops24h 55m

Tokyo Narita

sex 26/6

12:00-19:45

2 stops32h 45m

RM 1,980

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

sex 29/5

07:25-22:20

2 stops13h 55m

Tokyo Narita

qui 4/6

08:20-21:00

1 stop13h 40m

RM 1,988

Flights are sorted by cheapest return flights first.

Deals found on 12/4

Showing 1-10 of 48 resultsSorted by cheapest first
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Best time to book a flight from Kota Kinabalu to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Japan

What is the cheapest month to book a flight from Kota Kinabalu to Japan?

Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 759). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,351). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from BKI to JP?

Find hourly flight availability from Kota Kinabalu to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 15 abril 2026.

When flying from Kota Kinabalu to Japan, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

How often are flights from Kota Kinabalu to Japan delayed?

About 13% of weekly flights between Kota Kinabalu and Japan have experienced delays in the past year, with the average delay time being 35 minutes.

What is the most punctual flight time for Kota Kinabalu to Japan flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Japan flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 14% of flights being delayed.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated 15 abril 2026.
See what other customers who have flown with HK Express,China Eastern, andPhilippines AirAsia from Kota Kinabalu to Japan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3
HK Express
7.3
Good
44 reviews
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3
China Eastern
7.2
Good
202 reviews
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3
Philippines AirAsia
6.8
Okay
126 reviews
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3
AirAsia
6.8
Okay
232 reviews
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3
Scoot
6.7
Okay
325 reviews
HK Express
7.3
Good
44 reviews
Check prices

Boarding

7.4

Crew

7.5

Comfort

6.6

Food

5.9

Entertainment

5.4

Overall

7.3

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Japan?

    Most people fly from Kota Kinabalu (BKI) if they book a flight from Kota Kinabalu to Japan. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city centre.

  • How popular is this Kota Kinabalu to Japan flight route?

    This flight path from Kota Kinabalu to Japan was viewed by 89 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Kota Kinabalu to Japan?

    There are many flights that can get you from Kota Kinabalu to Japan in 9h 40m. Fly via Scoot, China Eastern, or Cathay Pacific to get the fastest option. The distance from Kota Kinabalu to Japan is about 3730 km. This flight may include one or multiple stops.

  • What are the cheapest airlines to fly from Kota Kinabalu to Japan one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at RM 462. Scoot flights start at RM 486 while deals on HK Express start at RM 525 one-way.

  • What are the most popular routes from Kota Kinabalu to Japan?

    The most popular flight routes from Kota Kinabalu to Japan are Kota Kinabalu - Osaka Kansai Intl, Kota Kinabalu - Tokyo Narita and Kota Kinabalu - Tokyo Haneda.

  • What are the cheapest flights from Kota Kinabalu to Japan?

    On average you can expect to pay RM 1,601 for a flight from Kota Kinabalu to Japan. The cheapest flight overall is RM 1,088 while the most popular route, (Kota Kinabalu - Osaka Kansai Intl) is currently priced at RM 1,735.

  • Can I find deals for flights from Kota Kinabalu to Japan that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Japan flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Japan.

  • Can I find deals for business class flights from Kota Kinabalu to Japan?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Japan?

    Currently, September is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 759). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,351). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top 8 airlines flying from Kota Kinabalu to Japan

Discover the top 8 airlines that operate flights from Kota Kinabalu to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 15 abril 2026.
AirlineCheapestAverageFlexibilityOn-time
China EasternCheapestRM 796AverageRM 1,701FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Philippines AirAsiaCheapestRM 1,004AverageRM 1,153FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
HK ExpressCheapestRM 1,035AverageRM 1,485FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ScootCheapestRM 1,166AverageRM 1,707FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
AirAsiaCheapestRM 1,407AverageRM 1,885FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
T'way AirCheapestRM 1,429AverageRM 1,740FlexibilityNo cancel feeOn-time88%
Search T'way Air flights
Malaysia AirlinesCheapestRM 1,624AverageRM 2,124FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
Batik AirCheapestRM 1,786AverageRM 1,849FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Japan?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Kota Kinabalu to Japan. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Japan?

Millions of users choose and trust Cheapflights to book the best flight deals from Kota Kinabalu to Japan for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Kota Kinabalu to Japan with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Kota Kinabalu to Japan, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Japan become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Japan from Kota Kinabalu today and book when prices fit your budget.

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