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Cheap flights from Kota Kinabalu to Japan from RM 648

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 6/3. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — FUK
20 Feb — 27 Feb1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Japan
Explore the most affordable flight options available from Kota Kinabalu to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 21 January 2026.

Thu 5/301:30
BKI
-
KIX
1 stop16h 50m
HK Express
Fri 13/320:15
KIX
-
BKI
1 stop29h 15m
HK Express
Deal found 20/1RM 1,321
Wed 4/301:30
BKI
-
KIX
1 stop16h 50m
Multiple Airlines
Thu 12/316:00
KIX
-
BKI
1 stop9h 30m
Multiple Airlines
Deal found 19/1RM 1,333
Fri 6/301:30
BKI
-
KIX
1 stop16h 50m
HK Express
Sat 14/314:15
KIX
-
BKI
1 stop11h 15m
HK Express
Deal found 20/1RM 1,341
Mon 11/509:45
BKI
-
HND
3 stops35h 50m
Multiple Airlines
Mon 18/523:50
HND
-
BKI
1 stop13h 50m
Multiple Airlines
Deal found 18/1RM 1,341
Tue 3/301:30
BKI
-
HND
1 stop22h 15m
HK Express
Wed 11/323:55
HND
-
BKI
1 stop25h 35m
HK Express
Deal found 18/1RM 1,373
Thu 5/301:30
BKI
-
NRT
1 stop16h 35m
HK Express
Fri 13/320:55
NRT
-
BKI
1 stop28h 35m
HK Express
Deal found 19/1RM 1,386
Sat 14/301:30
BKI
-
NRT
1 stop13h 25m
HK Express
Sun 15/320:55
NRT
-
BKI
1 stop28h 35m
HK Express
Deal found 19/1RM 1,390
Sun 1/201:30
BKI
-
NRT
1 stop17h 30m
HK Express
Thu 5/215:25
NRT
-
BKI
1 stop10h 05m
HK Express
Deal found 18/1RM 1,398
Thu 5/301:30
BKI
-
HND
1 stop22h 15m
HK Express
Fri 13/306:35
HND
-
BKI
1 stop18h 55m
HK Express
Deal found 20/1RM 1,499
Mon 2/206:00
BKI
-
NRT
2 stops32h 25m
Multiple Airlines
Thu 5/208:10
NRT
-
BKI
1 stop17h 20m
Multiple Airlines
Deal found 18/1RM 1,535
Mon 12/1006:00
BKI
-
CTS
3 stops25h 40m
Multiple Airlines
Wed 21/1011:00
CTS
-
BKI
2 stops22h 40m
Multiple Airlines
Deal found 19/1RM 1,535
Sun 3/501:45
BKI
-
NRT
2 stops11h 45m
Multiple Airlines
Sun 10/521:40
NRT
-
BKI
2 stops28h 40m
Multiple Airlines
Deal found 20/1RM 1,548

Find flight deals from Kota Kinabalu to Japan

Keep the following information in mind while searching for Kota Kinabalu to Japan flight deals. Data was last updated 21 January 2026.

Round-trip from

RM 1,321

One-way from

RM 648

Popular in

January

Cheapest in

June

Average price

RM 1,981

Good round-trip deal

RM 2,159 or less

Good one-way deal

RM 1,535 or less
HK Express
  • HK Express
  • 5/3-13/3
  • 2 total stops
  • 46h 05m total
  • Kota Kinabalu to Japan
Search Deals
HK Express
  • HK Express
  • 6/3
  • 1 total stop
  • 17h 40m total
  • Kota Kinabalu to Japan
Search Deals
Highest demand for flights based on searches. 12% potential increase in price (RM 928 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 134 potential savings vs. average return price).
Search Deals
Average for round-trip flights in January 2026
Search Deals
Price to beat on a round-trip flight from Kota Kinabalu to Japan.
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Japan.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 21 January 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Japan that are best for you.

Fly from

Kota Kinabalu

Fly to

Japan

Route

Departure

Return

Price

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Fri 6/3

01:30-19:20

1 stop16h 50m

Osaka Kansai Intl

Sat 14/3

14:15-00:30

1 stop11h 15m

RM 1,341

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 11/5

23:25-01:00

2 stops24h 35m

Tokyo Haneda

Mon 18/5

23:50-11:15

1 stop12h 25m

RM 1,373

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Tue 3/3

01:30-00:45

1 stop22h 15m

Tokyo Haneda

Wed 11/3

23:55-00:30

1 stop25h 35m

RM 1,373

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sat 14/3

01:30-15:55

1 stop13h 25m

Tokyo Narita

Sun 15/3

20:55-00:30

1 stop28h 35m

RM 1,390

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Wed 4/3

01:30-20:10

1 stop17h 40m

Osaka Kansai Intl

Thu 12/3

15:05-08:40

2 stops18h 35m

RM 1,450

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Thu 5/3

01:30-20:10

1 stop17h 40m

Osaka Kansai Intl

Fri 13/3

16:45-21:55

2 stops30h 10m

RM 1,568

Kota KinabaluOsaka

BKI - KIX

BKIKIX

Kota Kinabalu

Fri 6/3

01:30-19:20

1 stop16h 50m

Osaka Kansai Intl

Sat 14/3

09:30-10:30

2 stops26h 00m

RM 1,616

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Sun 19/7

12:15-01:00

1 stop11h 45m

Tokyo Haneda

Mon 27/7

02:15-08:45

1 stop31h 30m

RM 1,620

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Sun 3/5

01:15-22:55

1 stop20h 40m

Tokyo Haneda

Sat 9/5

02:15-08:45

1 stop31h 30m

RM 1,677

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Sun 12/4

01:45-20:30

2 stops17h 45m

Tokyo Narita

Sun 19/4

21:40-01:20

2 stops28h 40m

RM 1,681

Flights are sorted by cheapest return flights first.

Deals found on 19/1

Showing 1-10 of 49 results
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Best time to book a flight from Kota Kinabalu to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Japan

What is the cheapest month to book a flight from Kota Kinabalu to Japan?

Currently, June is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 790). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,495). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from BKI to JP?

Find hourly flight availability from Kota Kinabalu to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 21 January 2026.

When flying from Kota Kinabalu to Japan, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

How often are flights from Kota Kinabalu to Japan delayed?

About 10% of weekly flights between Kota Kinabalu and Japan have experienced delays in the past year, with the average delay time being 47 minutes.

What is the most punctual flight time for Kota Kinabalu to Japan flights?

Historically, flights departing in the early afternoon are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Japan flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 10% of flights being delayed.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated 21 January 2026.
See what other customers who have flown with China Eastern, HK Express, andAirAsia from Kota Kinabalu to Japan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
China Eastern
7.2
Good
190 reviews
Check prices

Boarding

7.6

Crew

7.8

Food

6.8

Overall

7.2

Comfort

7.2

Entertainment

6.1

Reviews

1 / 5
2.0
Mediocre

P R,Sept 2025

LGW - PVG

From check in to to the flight attendants, the staff of China Eastern were so rude. At check in, all staff had icy looks, and ours didn’t respond to any greetings or thank yous. Despite not at all leaning into the aisle, one flight attendant was repeatedly bolting up and down the aisle, and knocking me when passing by waking me up several times.
China Eastern
7.2
Good
190 reviews
China Eastern
7.2
Good
190 reviews
Check prices

Boarding

7.6

Crew

7.8

Food

6.8

Overall

7.2

Comfort

7.2

Entertainment

6.1

Reviews

1 / 5
2.0
Mediocre

P R,Sept 2025

LGW - PVG

From check in to to the flight attendants, the staff of China Eastern were so rude. At check in, all staff had icy looks, and ours didn’t respond to any greetings or thank yous. Despite not at all leaning into the aisle, one flight attendant was repeatedly bolting up and down the aisle, and knocking me when passing by waking me up several times.
HK Express
7.2
Good
43 reviews
China Eastern
7.2
Good
190 reviews
Check prices

Boarding

7.6

Crew

7.8

Food

6.8

Overall

7.2

Comfort

7.2

Entertainment

6.1

Reviews

1 / 5
2.0
Mediocre

P R,Sept 2025

LGW - PVG

From check in to to the flight attendants, the staff of China Eastern were so rude. At check in, all staff had icy looks, and ours didn’t respond to any greetings or thank yous. Despite not at all leaning into the aisle, one flight attendant was repeatedly bolting up and down the aisle, and knocking me when passing by waking me up several times.
AirAsia
6.8
Okay
223 reviews
China Eastern
7.2
Good
190 reviews
Check prices

Boarding

7.6

Crew

7.8

Food

6.8

Overall

7.2

Comfort

7.2

Entertainment

6.1

Reviews

1 / 5
2.0
Mediocre

P R,Sept 2025

LGW - PVG

From check in to to the flight attendants, the staff of China Eastern were so rude. At check in, all staff had icy looks, and ours didn’t respond to any greetings or thank yous. Despite not at all leaning into the aisle, one flight attendant was repeatedly bolting up and down the aisle, and knocking me when passing by waking me up several times.
Scoot
6.7
Okay
315 reviews
China Eastern
7.2
Good
190 reviews
Check prices

Boarding

7.6

Crew

7.8

Food

6.8

Overall

7.2

Comfort

7.2

Entertainment

6.1

Reviews

1 / 5
2.0
Mediocre

P R,Sept 2025

LGW - PVG

From check in to to the flight attendants, the staff of China Eastern were so rude. At check in, all staff had icy looks, and ours didn’t respond to any greetings or thank yous. Despite not at all leaning into the aisle, one flight attendant was repeatedly bolting up and down the aisle, and knocking me when passing by waking me up several times.

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Japan?

    Most people fly from Kota Kinabalu (BKI) if they book a flight from Kota Kinabalu to Japan. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city centre.

  • How popular is this Kota Kinabalu to Japan flight route?

    This flight path from Kota Kinabalu to Japan was viewed by 70 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Kota Kinabalu to Japan?

    There are many flights that can get you from Kota Kinabalu to Japan in 11h 45m. Fly via HK Express or Scoot to get the fastest option. The distance from Kota Kinabalu to Japan is about 4088 km. This flight may include one or multiple stops.

  • What are the cheapest airlines to fly from Kota Kinabalu to Japan one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at RM 474. Scoot flights start at RM 498 while deals on AirAsia start at RM 525 one-way.

  • What are the most popular routes from Kota Kinabalu to Japan?

    The most popular flight routes from Kota Kinabalu to Japan are Kota Kinabalu - Tokyo Narita, Kota Kinabalu - Tokyo Haneda and Kota Kinabalu - Osaka Kansai Intl.

  • What are the cheapest flights from Kota Kinabalu to Japan?

    On average you can expect to pay RM 2,159 for a flight from Kota Kinabalu to Japan. The cheapest flight overall is RM 1,921 while the most popular route, (Kota Kinabalu - Tokyo Narita) is currently priced at RM 1,422.

  • Can I find deals for flights from Kota Kinabalu to Japan that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Japan flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Japan.

  • Can I find deals for business class flights from Kota Kinabalu to Japan?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Japan?

    Currently, June is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 790). Flying from Kota Kinabalu to Japan in April is currently the most expensive (average of RM 1,495). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Alternative routes for Kota Kinabalu to Japan

See prices for flight routes from nearby airports that may be better suited for you.
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Top 10 airlines flying from Kota Kinabalu to Japan

Discover the top 10 airlines that operate flights from Kota Kinabalu to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 21 January 2026.
AirlineCheapestAverageFlexibilityOn-time
Jin AirCheapestRM 803AverageRM 1,947FlexibilityNo cancel feeOn-time78%
Search Jin Air flights
China EasternCheapestRM 816AverageRM 1,671FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Philippines AirAsiaCheapestRM 1,029AverageRM 1,180FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
HK ExpressCheapestRM 1,061AverageRM 1,483FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ScootCheapestRM 1,195AverageRM 1,750FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
T'way AirCheapestRM 1,341AverageRM 1,649FlexibilityNo cancel feeOn-time88%
Search T'way Air flights
Batik AirCheapestRM 1,404AverageRM 1,831FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights
AirAsiaCheapestRM 1,419AverageRM 1,924FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
Malaysia AirlinesCheapestRM 1,665AverageRM 2,197FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
China SouthernCheapestRM 1,954AverageRM 2,548FlexibilityNo cancel feeOn-time69%
Search China Southern flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Japan?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Kota Kinabalu to Japan. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Japan?

Millions of users choose and trust Cheapflights to book the best flight deals from Kota Kinabalu to Japan for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Kota Kinabalu to Japan with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Kota Kinabalu to Japan, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Japan become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Japan from Kota Kinabalu today and book when prices fit your budget.

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