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Cheap flights from Kota Kinabalu to Japan from RM 687

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 13/10. Fares are subject to change and may not be available on all flights or dates of travel.
BKI — FUK
18 May — 25 May1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Kota Kinabalu to Japan

Enter your travel dates to find the best prices.

Cheapest flights from Kota Kinabalu to Japan
Explore the most affordable flight options available from Kota Kinabalu to Japan. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 18 April 2026.

Mon 22/609:50
BKI
-
HND
1 stop14h 15m
Scoot
Thu 25/602:20
HND
-
BKI
1 stop11h 35m
Scoot
Deal found 14/4RM 1,450
Thu 18/600:30
BKI
-
NRT
1 stop14h 20m
Multiple Airlines
Thu 25/608:20
NRT
-
BKI
1 stop13h 40m
Multiple Airlines
Deal found 14/4RM 1,465
Mon 22/609:50
BKI
-
NRT
1 stop20h 15m
Scoot
Fri 26/608:20
NRT
-
BKI
1 stop12h 25m
Scoot
Deal found 14/4RM 1,497
Fri 19/613:55
BKI
-
NRT
2 stops29h 05m
Scoot
Thu 25/608:20
NRT
-
BKI
1 stop13h 40m
Scoot
Deal found 14/4RM 1,552
Fri 15/520:45
BKI
-
NRT
2 stops22h 15m
Scoot
Fri 22/508:20
NRT
-
BKI
1 stop12h 25m
Scoot
Deal found 15/4RM 1,576
Wed 17/609:50
BKI
-
NRT
1 stop20h 15m
Scoot
Mon 22/608:20
NRT
-
BKI
1 stop12h 10m
Scoot
Deal found 14/4RM 1,584
Fri 29/501:15
BKI
-
KIX
1 stop9h 35m
HK Express
Tue 9/614:25
KIX
-
BKI
1 stop11h 05m
HK Express
Deal found 14/4RM 1,588
Tue 2/607:25
BKI
-
NRT
1 stop11h 35m
Multiple Airlines
Tue 9/608:20
NRT
-
BKI
1 stop13h 40m
Multiple Airlines
Deal found 18/4RM 1,592
Wed 17/609:50
BKI
-
HND
1 stop14h 15m
Scoot
Sun 21/602:20
HND
-
BKI
1 stop18h 10m
Scoot
Deal found 14/4RM 1,600
Mon 8/609:50
BKI
-
NRT
2 stops33h 10m
Scoot
Fri 12/608:20
NRT
-
BKI
1 stop12h 25m
Scoot
Deal found 16/4RM 1,604
Tue 2/622:00
BKI
-
HND
1 stop26h 05m
Multiple Airlines
Tue 9/623:50
HND
-
BKI
1 stop16h 45m
Multiple Airlines
Deal found 18/4RM 1,608
Thu 14/500:55
BKI
-
NRT
1 stop11h 55m
Multiple Airlines
Fri 22/508:20
NRT
-
BKI
1 stop12h 25m
Multiple Airlines
Deal found 17/4RM 1,612

Find flight deals from Kota Kinabalu to Japan

Keep the following information in mind while searching for Kota Kinabalu to Japan flight deals. Data was last updated 18 April 2026.

Round-trip from

RM 1,450

One-way from

RM 687

Popular in

December

Cheapest in

July

Average price

RM 1,469

Good round-trip deal

RM 1,739 or less

Good one-way deal

RM 1,319 or less
Scoot
  • Scoot
  • 22/6-25/6
  • 2 total stops
  • 25h 50m total
  • Kota Kinabalu to Japan
Search Deals
13/10
  • 13/10
  • 1 total stop
  • 14h 05m total
  • Kota Kinabalu to Japan
Search Deals
Highest demand for flights based on searches. 5% potential increase in price (RM 395 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 1% potential price decrease (RM 91 potential savings vs. average return price).
Search Deals
Average for round-trip flights in April 2026
Search Deals
Price to beat on a round-trip flight from Kota Kinabalu to Japan.
Search Deals
Price to beat on a one-way flight from Kota Kinabalu to Japan.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Kota Kinabalu to Japan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 18 April 2026.
Use the filters below to find and compare flights from Kota Kinabalu to Japan that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Thu 18/6

00:30-15:50

1 stop14h 20m

Tokyo Narita

Thu 25/6

08:20-21:00

1 stop13h 40m

RM 1,465

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Fri 15/5

20:45-20:00

2 stops22h 15m

Tokyo Narita

Fri 22/5

08:20-19:45

1 stop12h 25m

RM 1,576

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Mon 8/6

09:50-01:05

1 stop14h 15m

Tokyo Haneda

Thu 11/6

02:20-19:45

1 stop18h 25m

RM 1,647

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Tue 2/6

07:25-20:00

1 stop11h 35m

Tokyo Narita

Tue 9/6

21:15-19:30

2 stops23h 15m

RM 1,663

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Wed 17/6

16:30-01:05

2 stops31h 35m

Tokyo Haneda

Sun 21/6

02:20-19:30

1 stop18h 10m

RM 1,722

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Sat 30/5

01:15-22:55

1 stop20h 40m

Tokyo Haneda

Sun 7/6

06:35-00:30

1 stop18h 55m

RM 1,853

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Tue 12/5

18:45-15:50

3 stops20h 05m

Tokyo Narita

Sat 23/5

08:20-11:15

1 stop27h 55m

RM 1,876

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Fri 29/5

07:25-20:00

1 stop11h 35m

Tokyo Narita

Fri 5/6

15:45-00:30

1 stop9h 45m

RM 1,896

Kota KinabaluTokyo

BKI - HND

BKIHND

Kota Kinabalu

Fri 15/5

20:45-01:05

1 stop27h 20m

Tokyo Haneda

Thu 21/5

02:20-19:45

1 stop18h 25m

RM 1,912

Kota KinabaluTokyo

BKI - NRT

BKINRT

Kota Kinabalu

Thu 21/5

07:25-20:00

1 stop11h 35m

Tokyo Narita

Thu 28/5

09:15-22:25

1 stop14h 10m

RM 1,920

Flights are sorted by cheapest return flights first.

Deals found on 18/4

Showing 1-10 of 45 resultsSorted by cheapest first
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Best time to book a flight from Kota Kinabalu to Japan

Have a flexible travel schedule? Discover the best time to fly to Japan from Kota Kinabalu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Kota Kinabalu to Japan

What is the cheapest month to book a flight from Kota Kinabalu to Japan?

Currently, July is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 502). Flying from Kota Kinabalu to Japan in February is currently the most expensive (average of RM 1,221). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from BKI to JP?

Find hourly flight availability from Kota Kinabalu to Japan. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 18 April 2026.

When flying from Kota Kinabalu to Japan, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

How often are flights from Kota Kinabalu to Japan delayed?

About 13% of weekly flights between Kota Kinabalu and Japan have experienced delays in the past year, with the average delay time being 35 minutes.

What is the most punctual flight time for Kota Kinabalu to Japan flights?

Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.

What day of the week experiences the fewest flight delays on this route?

Monday tends to have the lowest number of delays on this route, whereas Thursday has historically faced a higher average of delays compared to other days of the week.

Which airline has the best punctuality record on Kota Kinabalu to Japan flights?

Over the past year, Malaysia Airlines have had the lowest number of delays on this route, with just 14% of flights being delayed.

Reviews of airlines servicing Japan

Get insights into the airlines that provide service to Japan. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Japan. Reviews last updated 18 April 2026.
See what other customers who have flown with China Eastern,HK Express, andPhilippines AirAsia from Kota Kinabalu to Japan have to say. You can also see how each airline compares in terms of entertainment options, comfort, food, crew/service, and boarding process.
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.
China Eastern
7.3
Good
207 reviews
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.
HK Express
7.3
Good
44 reviews
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.
Philippines AirAsia
6.8
Okay
126 reviews
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.
AirAsia
6.8
Okay
232 reviews
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.
Scoot
6.7
Okay
325 reviews
China Eastern
7.3
Good
207 reviews
Check prices

Boarding

7.6

Food

6.9

Overall

7.3

Crew

7.8

Comfort

7.3

Entertainment

6.2

Reviews

1 / 7
10.0
Excellent

Anonymous,Feb 2026

LGW - PVG

Not much selection for westerners with regards to videos. But the upgrade was amazing. So gave 5 stars. Thank you.

Related info for your journey

Find useful and relevant information for your journey from Kota Kinabalu to Japan. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly from for flights from Kota Kinabalu to Japan?

    Most people fly from Kota Kinabalu (BKI) if they book a flight from Kota Kinabalu to Japan. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city centre.

  • How popular is this Kota Kinabalu to Japan flight route?

    This flight path from Kota Kinabalu to Japan was viewed by 89 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • How long is the flight from Kota Kinabalu to Japan?

    There are many flights that can get you from Kota Kinabalu to Japan in 10h 50m. Fly via Scoot, HK Express, or China Eastern to get the fastest option. The distance from Kota Kinabalu to Japan is about 3730 km. This flight may include one or multiple stops.

  • What are the cheapest airlines to fly from Kota Kinabalu to Japan one-way?

    To fly one-way, consider booking your trip with Philippines AirAsia, which is currently one of the cheapest options available, starting at RM 462. Scoot flights start at RM 486 while deals on HK Express start at RM 525 one-way.

  • What are the most popular routes from Kota Kinabalu to Japan?

    The most popular flight routes from Kota Kinabalu to Japan are Kota Kinabalu - Tokyo Narita, Kota Kinabalu - Osaka Kansai Intl and Kota Kinabalu - Tokyo Haneda.

  • What are the cheapest flights from Kota Kinabalu to Japan?

    On average you can expect to pay RM 1,600 for a flight from Kota Kinabalu to Japan. The cheapest flight overall is RM 1,088 while the most popular route, (Kota Kinabalu - Tokyo Narita) is currently priced at RM 1,576.

  • Can I find deals for flights from Kota Kinabalu to Japan that include hotel bookings?

    Yes. In addition to deals on Kota Kinabalu to Japan flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Kota Kinabalu to Japan?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Kota Kinabalu to Japan.

  • Can I find deals for business class flights from Kota Kinabalu to Japan?

    Yes. Cheapflights offers flight deals from Kota Kinabalu to Japan by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Kota Kinabalu to Japan?

    Currently, July is the cheapest month in which you can book a flight from Kota Kinabalu to Japan (average of RM 502). Flying from Kota Kinabalu to Japan in February is currently the most expensive (average of RM 1,221). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Top 8 airlines flying from Kota Kinabalu to Japan

Discover the top 8 airlines that operate flights from Kota Kinabalu to Japan. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 18 April 2026.
AirlineCheapestAverageFlexibilityOn-time
China EasternCheapestRM 795AverageRM 1,700FlexibilityNo cancel feeOn-time62%
Search China Eastern flights
Philippines AirAsiaCheapestRM 1,003AverageRM 1,153FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
HK ExpressCheapestRM 1,035AverageRM 1,484FlexibilityNo cancel feeOn-time90%
Search HK Express flights
ScootCheapestRM 1,165AverageRM 1,706FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
AirAsiaCheapestRM 1,407AverageRM 1,884FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
T'way AirCheapestRM 1,428AverageRM 1,739FlexibilityNo cancel feeOn-time88%
Search T'way Air flights
Malaysia AirlinesCheapestRM 1,623AverageRM 2,124FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights
Batik AirCheapestRM 1,785AverageRM 1,848FlexibilityNo cancel feeOn-timeN/A
Search Batik Air flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Kota Kinabalu to Japan?

Cheapflights goes through 900+ travel sites to look for the best flight deals for flights from Kota Kinabalu to Japan. Too many options? Cheapflights also provides filters for things like airlines, price ranges, and number of stops to help you make a decision easily.

Why should you use Cheapflights to find cheap flight tickets from Kota Kinabalu to Japan?

Millions of users choose and trust Cheapflights to book the best flight deals from Kota Kinabalu to Japan for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Kota Kinabalu to Japan with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Kota Kinabalu to Japan, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Kota Kinabalu to Japan become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Japan from Kota Kinabalu today and book when prices fit your budget.

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