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Cheap flights from Manila to Kota Kinabalu from RM 295

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 16/8. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
4 Sep — 11 Sep1
1 adult
1 adult, Economy, 0 bags
Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in February or October, booked 47 days in advance, depart on a Wednesday or Thursday and return on a Wednesday

Cheap flight deals from Manila to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 5 August 2026.

Fri 11/923:10 -
Nonstop2h 10m
Sun 13/901:45 -
Nonstop2h 10m
Deal found 31/7RM 487
Wed 11/1116:15 -
Nonstop2h 05m
Mon 16/1119:05 -
Nonstop2h 10m
Deal found 31/7RM 520
Mon 21/923:10 -
Nonstop2h 10m
Fri 25/901:45 -
Nonstop2h 10m
Deal found 4/8RM 577
Fri 18/923:10 -
Nonstop2h 10m
Mon 21/901:45 -
Nonstop2h 10m
Deal found 2/8RM 598
Fri 28/823:10 -
Nonstop2h 10m
Wed 2/901:45 -
Nonstop2h 10m
Deal found 2/8RM 630
Fri 18/923:10 -
Nonstop2h 10m
Sun 20/901:45 -
Nonstop2h 10m
Deal found 3/8RM 634
Fri 7/823:10 -
Nonstop2h 10m
Sun 9/801:45 -
Nonstop2h 10m
Deal found 3/8RM 663
Wed 30/923:10 -
Nonstop2h 10m
Sun 4/1001:45 -
Nonstop2h 10m
Deal found 4/8RM 667
Mon 28/923:10 -
Nonstop2h 10m
Sun 4/1001:45 -
Nonstop2h 10m
Deal found 4/8RM 675
Mon 24/823:10 -
Nonstop2h 10m
Wed 26/801:45 -
Nonstop2h 10m
Deal found 3/8RM 688

Find flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 5 August 2026.

Round-trip from

RM 487

One-way from

RM 295

Popular in

August

Cheapest in

February

Average price

RM 667

Good round-trip deal

RM 556 or less

Good one-way deal

RM 293 or less
Philippines AirAsia
  • Philippines AirAsia
  • 11/9-13/9
  • Nonstop
  • 4h 20m total
  • Manila to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 16/8
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 8% potential increase in price (RM 211 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease (RM 55 potential savings vs. average return price).
Search Deals
Average for round-trip flights in August 2026
Search Deals
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 5 August 2026.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight
Fastest return journey

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 30/9

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Sun 4/10

01:45-03:55

Nonstop2h 10m

RM 667

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 19/9

06:55-07:25

2 stops24h 30m

Kota Kinabalu

Wed 23/9

01:45-03:55

Nonstop2h 10m

RM 1,077

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/11

06:30-19:00

1 stop12h 30m

Kota Kinabalu

Mon 16/11

11:50-05:30

1 stop17h 40m

RM 1,097

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 29/9

19:40-08:50

1 stop13h 10m

Kota Kinabalu

Fri 2/10

20:45-05:50

1 stop9h 05m

RM 1,412

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 1/11

06:40-00:55

1 stop18h 15m

Kota Kinabalu

Thu 5/11

19:05-03:40

1 stop8h 35m

RM 1,797

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 18/8

22:45-08:35

1 stop9h 50m

Kota Kinabalu

Fri 21/8

07:00-18:40

2 stops11h 40m

RM 1,830

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 1/11

19:30-11:05

1 stop15h 35m

Kota Kinabalu

Thu 5/11

11:50-05:30

1 stop17h 40m

RM 1,965

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 20/12

21:20-15:20

1 stop18h 00m

Kota Kinabalu

Sat 26/12

16:05-06:20

1 stop14h 15m

RM 2,022

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 11/11

19:45-18:20

2 stops22h 35m

Kota Kinabalu

Sun 15/11

01:30-11:20

1 stop9h 50m

RM 2,133

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 11/9

05:30-00:30

1 stop19h 00m

Kota Kinabalu

Mon 14/9

12:40-09:35

2 stops20h 55m

RM 2,137

Flights are sorted by cheapest return flights first.

Deals found on 4/8

Showing 1-10 of 21 resultsSorted by cheapest first
1
2
3

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

To ensure you get the cheapest price possible for a flight from Manila to Kota Kinabalu, you should look to book at least 46 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

What is the cheapest month to book a flight from Manila to Kota Kinabalu?

Currently, February is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 446). Flying from Manila to Kota Kinabalu in June is currently the most expensive (average of RM 671). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 5 August 2026.

Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Manila to Kota Kinabalu as you normally would.

How much does it cost for a return flight from Manila to Kota Kinabalu?

Airfare is below average for this route at the moment.

Manila to Kota Kinabalu flights typically cost between RM 557 and RM 741 in September.
The cheapest return price found within the last 5 days was RM 487 on Philippines AirAsia (11 Sept–13 Sept).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated 5 August 2026.
Read through reviews of airlines operating flights from Manila to Kota Kinabalu, such as Philippines AirAsia. Reviews also offer insight into each airline's entertainment options, comfort, food, crew/service, and boarding process.
Philippines AirAsia
6.8
Okay
126 reviews
Check prices

Crew

7.6

Food

6.4

Overall

6.8

Boarding

6.8

Comfort

6.7

Entertainment

5.7

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points
Philippines AirAsia
6.8
Okay
126 reviews
Philippines AirAsia
6.8
Okay
126 reviews
Check prices

Crew

7.6

Food

6.4

Overall

6.8

Boarding

6.8

Comfort

6.7

Entertainment

5.7

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    Flights from Manila Ninoy Aquino Intl to Kota Kinabalu have been viewed 70 times in the past calendar month.

  • How long is the flight from Manila to Kota Kinabalu?

    Philippines AirAsia, Scoot, and Malaysia Airlines can get you from Manila to Kota Kinabalu in just under 2h 10m. Your travel time can differ by up to 16h 05m. The distance between Manila and Kota Kinabalu is about 1096 km. When browsing for deals, the options you’ll see will be for both direct flights and flights with stops.

  • What is the cheapest airline to fly from Manila to Kota Kinabalu round-trip?

    Cheapflights users have booked flights from Manila to Kota Kinabalu round-trip from RM 431. Philippines AirAsia is currently priced 19% below the average price you’ll pay for this route.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    While on average a flight from Manila to Kota Kinabalu is generally RM 482, our data shows the cheapest flight currently is RM 286. When looking at the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu), you can expect to pay RM 610 for that flight.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Kota Kinabalu?

    Currently, February is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 446). Flying from Manila to Kota Kinabalu in June is currently the most expensive (average of RM 671). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Fly from Manila to Kota Kinabalu on these airlines

Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on 5 August 2026.
Philippines AirAsia flights from Manila Ninoy Aquino Intl to Kota Kinabalu

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 5 August 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapestRM 431AverageRM 613FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Kota Kinabalu?

Deals for Manila to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.

Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Manila to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Kota Kinabalu from Manila today and book when prices fit your budget.

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