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Cheap flights from Manila to Kota Kinabalu from RM 329

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 26/7. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
27 May — 3 Jun1
1 adult
1 adult, Economy, 0 bags
Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in July or August, booked 65 days in advance, depart on a Tuesday or Thursday and return on a Tuesday

Cheap flight deals from Manila to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 27 April 2026.

Wed 29/706:55
MNL
-
BKI
1 stop12h 35m
Scoot
Sun 2/812:15
BKI
-
MNL
1 stop17h 35m
Scoot
Deal found 24/4RM 701
Wed 24/623:10
MNL
-
BKI
Nonstop2h 10m
Philippines AirAsia
Mon 6/701:45
BKI
-
MNL
Nonstop2h 10m
Philippines AirAsia
Deal found 23/4RM 729
Mon 27/719:40
MNL
-
BKI
1 stop15h 35m
Scoot
Sun 2/812:15
BKI
-
MNL
1 stop17h 35m
Scoot
Deal found 24/4RM 733
Thu 25/619:40
MNL
-
BKI
1 stop17h 15m
Scoot
Tue 7/712:15
BKI
-
MNL
1 stop17h 35m
Scoot
Deal found 23/4RM 761
Wed 3/623:10
MNL
-
BKI
Nonstop2h 10m
Philippines AirAsia
Mon 8/601:45
BKI
-
MNL
Nonstop2h 10m
Philippines AirAsia
Deal found 22/4RM 777
Wed 13/523:10
MNL
-
BKI
Nonstop2h 10m
Philippines AirAsia
Fri 15/501:45
BKI
-
MNL
Nonstop2h 10m
Philippines AirAsia
Deal found 23/4RM 785
Sun 19/723:10
MNL
-
BKI
Nonstop2h 10m
Philippines AirAsia
Sun 26/701:45
BKI
-
MNL
Nonstop2h 10m
Philippines AirAsia
Deal found 25/4RM 792
Wed 24/606:55
MNL
-
BKI
1 stop12h 35m
Scoot
Tue 7/712:15
BKI
-
MNL
1 stop17h 35m
Scoot
Deal found 23/4RM 816
Mon 27/423:10
MNL
-
BKI
Nonstop2h 10m
Philippines AirAsia
Wed 6/501:45
BKI
-
MNL
Nonstop2h 10m
Philippines AirAsia
Deal found 24/4RM 832

Find flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 27 April 2026.

Round-trip from

RM 701

One-way from

RM 329

Popular in

December

Cheapest in

July

Average price

RM 416

Good round-trip deal

RM 475 or less
Scoot
  • Scoot
  • 29/7-2/8
  • 2 total stops
  • 30h 10m total
  • Manila to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 26/7
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (RM 269 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 2% potential price decrease (RM 51 potential savings vs. average return price).
Search Deals
Average for round-trip flights in April 2026
Search Deals
Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 27 April 2026.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 29/7

06:55-19:30

1 stop12h 35m

Kota Kinabalu

Sun 2/8

12:15-05:50

1 stop17h 35m

RM 701
Fastest return journey

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 19/7

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Wed 22/7

01:45-03:55

Nonstop2h 10m

RM 781

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 3/6

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Mon 8/6

01:45-03:55

Nonstop2h 10m

RM 781

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 8/6

19:40-21:00

1 stop25h 20m

Kota Kinabalu

Mon 15/6

20:30-18:40

1 stop22h 10m

RM 907

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 1/6

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Wed 3/6

01:45-03:55

Nonstop2h 10m

RM 931

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 19/6

19:40-19:45

1 stop24h 05m

Kota Kinabalu

Sun 21/6

13:50-05:50

1 stop16h 00m

RM 995

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 3/6

06:55-19:30

1 stop12h 35m

Kota Kinabalu

Tue 9/6

22:00-05:50

1 stop7h 50m

RM 999

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 19/7

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Thu 23/7

16:35-20:55

1 stop4h 20m

RM 1,006

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 3/6

23:10-01:20

Nonstop2h 10m

Kota Kinabalu

Tue 9/6

21:05-14:10

1 stop17h 05m

RM 1,014

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 9/6

19:40-08:50

1 stop13h 10m

Kota Kinabalu

Mon 15/6

01:45-03:55

Nonstop2h 10m

RM 1,042

Flights are sorted by cheapest return flights first.

Deals found on 24/4

Showing 1-10 of 21 resultsSorted by cheapest first
1
2
3

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

To ensure you get the cheapest price possible for a flight from Manila to Kota Kinabalu, you should look to book at least 64 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.

What is the cheapest month to book a flight from Manila to Kota Kinabalu?

Currently, July is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 341). Flying from Manila to Kota Kinabalu in December is currently the most expensive (average of RM 555). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 27 April 2026.

Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Manila to Kota Kinabalu as you normally would.

How much does it cost for a return flight from Manila to Kota Kinabalu?

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated 27 April 2026.
Read through reviews of airlines operating flights from Manila to Kota Kinabalu, such as Philippines AirAsia. Reviews also offer insight into each airline's entertainment options, comfort, food, crew/service, and boarding process.
Philippines AirAsia
6.8
Okay
126 reviews
Check prices

Boarding

6.8

Entertainment

5.7

Food

6.4

Comfort

6.7

Crew

7.6

Overall

6.8

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points
Philippines AirAsia
6.8
Okay
126 reviews
Philippines AirAsia
6.8
Okay
126 reviews
Check prices

Boarding

6.8

Entertainment

5.7

Food

6.4

Comfort

6.7

Crew

7.6

Overall

6.8

Reviews

1 / 4
6.0
Good

Edward,Feb 2024

DVO - MNL

Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    Flights from Manila Ninoy Aquino Intl to Kota Kinabalu have been viewed 99 times in the past calendar month.

  • How long is the flight from Manila to Kota Kinabalu?

    Scoot and Philippines AirAsia can get you from Manila to Kota Kinabalu in just under 2h 10m. Your travel time can differ by up to 10h 25m. The distance between Manila and Kota Kinabalu is about 1096 km. When browsing for deals, the options you’ll see will be for both direct flights and flights with stops.

  • What is the cheapest airline to fly from Manila to Kota Kinabalu round-trip?

    Cheapflights users have booked flights from Manila to Kota Kinabalu round-trip from RM 296. Philippines AirAsia is currently priced 30% below the average price you’ll pay for this route.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    While on average a flight from Manila to Kota Kinabalu is generally RM 475, our data shows the cheapest flight currently is RM 447. When looking at the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu), you can expect to pay RM 701 for that flight.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Kota Kinabalu?

    Currently, July is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 341). Flying from Manila to Kota Kinabalu in December is currently the most expensive (average of RM 555). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Fly from Manila to Kota Kinabalu on these airlines

Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on 27 April 2026.
Philippines AirAsia flights from Manila Ninoy Aquino Intl to Kota Kinabalu

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 27 April 2026.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapestRM 296AverageRM 416FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Kota Kinabalu?

Deals for Manila to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.

Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?

Cheapflights does show flights with no change fees to all users. To see these options for flights from Manila to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.

Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?

Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Kota Kinabalu from Manila today and book when prices fit your budget.

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