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Cheap flights from Cebu City to Kota Kinabalu from RM 293

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 16/3. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
17 Mar — 24 Mar1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu City to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu City to Kota Kinabalu
Explore the most affordable flight options available from Cebu City to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 15 February 2026.

Fri 20/303:05
CEB
-
BKI
1 stop18h 20m
Multiple Airlines
Sun 22/319:15
BKI
-
CEB
1 stop6h 35m
Multiple Airlines
Deal found 15/2RM 953
Sun 21/612:00
CEB
-
BKI
1 stop12h 30m
Cathay Pacific
Tue 23/601:15
BKI
-
CEB
1 stop16h 55m
Cathay Pacific
Deal found 14/2RM 1,574
Mon 23/203:20
CEB
-
BKI
2 stops12h 00m
Philippine Airlines
Thu 26/205:20
BKI
-
CEB
2 stops19h 00m
Philippine Airlines
Deal found 12/2RM 1,820
Sun 21/607:05
CEB
-
BKI
2 stops32h 30m
Philippine Airlines
Wed 24/605:20
BKI
-
CEB
2 stops24h 20m
Philippine Airlines
Deal found 12/2RM 1,921
Sat 20/601:55
CEB
-
BKI
1 stop9h 20m
Scoot
Wed 24/620:30
BKI
-
CEB
1 stop15h 25m
Scoot
Deal found 12/2RM 2,003
Fri 20/303:20
CEB
-
BKI
2 stops17h 50m
Philippine Airlines
Sun 22/305:20
BKI
-
CEB
2 stops15h 40m
Philippine Airlines
Deal found 15/2RM 2,156
Sun 21/615:40
CEB
-
BKI
1 stop17h 05m
Singapore Airlines
Wed 24/615:00
BKI
-
CEB
2 stops23h 50m
Singapore Airlines
Deal found 11/2RM 2,452
Sat 28/301:10
CEB
-
BKI
1 stop10h 05m
Scoot
Sun 5/412:15
BKI
-
CEB
1 stop12h 45m
Scoot
Deal found 12/2RM 2,624
Sun 22/203:20
CEB
-
BKI
2 stops13h 45m
Philippine Airlines
Fri 27/205:20
BKI
-
CEB
2 stops19h 00m
Philippine Airlines
Deal found 12/2RM 2,659

Find flight deals from Cebu City to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Cebu City (CEB) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 15 February 2026.

Round-trip from

RM 953

One-way from

RM 293

Popular in

January

Cheapest in

February

Average price

RM 590
Philippines AirAsia
  • Philippines AirAsia
  • 20/3-22/3
  • 2 total stops
  • 24h 55m total
  • Cebu City to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 16/3
  • 1 total stop
  • 11h 55m total
  • Cebu City to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 13% potential increase in price (RM 549 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 10% potential price decrease (RM 329 potential savings vs. average return price).
Search Deals
Average for round-trip flights in February 2026
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu City to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 15 February 2026.
Use the filters below to find and compare flights from Cebu City to Kota Kinabalu that are best for you.

Fly from

Cebu City

Fly to

Kota Kinabalu

Route

Departure

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 20/3

03:05-21:25

1 stop18h 20m

Kota Kinabalu

Sun 22/3

19:15-01:50

1 stop6h 35m

RM 953

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 21/6

12:00-00:30

1 stop12h 30m

Kota Kinabalu

Tue 23/6

01:15-18:10

1 stop16h 55m

RM 1,574

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 20/6

03:10-18:20

2 stops15h 10m

Kota Kinabalu

Wed 24/6

05:20-21:10

2 stops15h 50m

RM 1,921

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 20/6

01:55-11:15

1 stop9h 20m

Kota Kinabalu

Wed 24/6

20:30-11:55

1 stop15h 25m

RM 2,003

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 20/3

03:20-21:10

2 stops17h 50m

Kota Kinabalu

Sun 22/3

05:20-21:00

2 stops15h 40m

RM 2,156

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 21/6

15:40-08:45

1 stop17h 05m

Kota Kinabalu

Wed 24/6

15:00-14:50

2 stops23h 50m

RM 2,452

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 16/3

06:35-18:30

1 stop11h 55m

RM 293

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 21/3

23:45-18:30

1 stop18h 45m

RM 305

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 14/3

23:45-18:30

1 stop18h 45m

RM 332

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 14/3

02:20-18:30

1 stop16h 10m

RM 336

Flights are sorted by cheapest return flights first.

Deals found on 12/2

Showing 1-10 of 17 results
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Best time to book a flight from Cebu City to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu City with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Cebu City to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Cebu City to Kota Kinabalu?

    Cathay Pacific and Philippine Airlines can get you from Cebu City to Kota Kinabalu in just under 12h 30m. Your travel time can differ by up to 2h 40m. The distance from Cebu City to Kota Kinabalu is about 999 km. This flight may include one or multiple stops.

  • Can I find deals for flights from Cebu City to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu City to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu City to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu City to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu City to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu City to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car hire
Kota Kinabalu Airport car hire
Labuan Airport car hire
Sandakan car hire

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu City to Kota Kinabalu?

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Why should you use Cheapflights to find cheap flight tickets from Cebu City to Kota Kinabalu?

Millions of users choose and trust Cheapflights to book the best flight deals from Cebu City to Kota Kinabalu for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Cebu City to Kota Kinabalu with no change fees?

Users can book flights with no change fees policies with our dedicated filters. Book flights from Cebu City to Kota Kinabalu flexibly with Cheapflights today.

Can Cheapflights notify me if prices for flights from Cebu City to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Cebu City to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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