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Cheap flights from Cebu City to Kota Kinabalu from RM 724

This is the cheapest retur flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 15/1. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
3 Dec — 10 Dec1
1 adult
1 adult, Economy, 0 bags

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Cheapest flights from Cebu City to Kota Kinabalu
Explore the most affordable flight options available from Cebu City to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 3 November 2025.

Sun 16/1102:20CEB - BKI
1 stop16h 10mMultiple Airlines
Wed 19/1122:40BKI - CEB
1 stop22h 45mMultiple Airlines
Deal found 1/11RM 782
Wed 12/1108:00CEB - BKI
1 stop10h 30mMultiple Airlines
Thu 13/1113:30BKI - CEB
2 stops11h 05mMultiple Airlines
Deal found 2/11RM 1,063

Cheap flight deals from Cebu City to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Cebu City (CEB) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 3 November 2025.

Round-trip from

RM 724

Popular in

March

Cheapest in

August

Average price

RM 674
15/1-19/1
  • 15/1-19/1
  • 2 total stops
  • 28h 05m total
  • Cebu City to Kota Kinabalu
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Highest demand for flights based on searches. 33% potential increase in price (RM 1,913 potential increase over avg. return price).
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Cheapest flight prices on average. 10% potential price decrease (RM 380 potential savings vs. average return price).
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Average for round-trip flights in November 2025
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Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu City to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 3 November 2025.
Use the filters below to find and compare flights from Cebu City to Kota Kinabalu that are best for you.

Fly from

Cebu City

Fly to

Kota Kinabalu

Route

Departure

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 15/1

03:05-18:30

1 stop15h 25m

Kota Kinabalu

Mon 19/1

23:25-12:05

1 stop12h 40m

RM 724

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 16/11

02:20-18:30

1 stop16h 10m

Kota Kinabalu

Wed 19/11

22:40-21:25

1 stop22h 45m

RM 782

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 9/3

03:30-21:40

1 stop18h 10m

Kota Kinabalu

Tue 17/3

10:10-21:25

1 stop11h 15m

RM 858

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 15/1

03:20-15:20

2 stops12h 00m

Kota Kinabalu

Mon 19/1

05:20-07:00

2 stops25h 40m

RM 1,732

Flights are sorted by cheapest return flights first.

Deals found on 2/11

Best time to book a flight from Cebu City to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu City with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Cebu City to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • Can I find deals for flights from Cebu City to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu City to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu City to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu City to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu City to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu City to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car hire
Kota Kinabalu Airport car hire
Labuan Airport car hire
Sandakan car hire
Tawau car hire

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Users can book flights with no change fees policies with our dedicated filters. Book flights from Cebu City to Kota Kinabalu flexibly with Cheapflights today.

Can Cheapflights notify me if prices for flights from Cebu City to Kota Kinabalu become cheaper?

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