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Cheap flights from Cebu City to Kota Kinabalu from RM 401

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 20/10. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
25 Aug — 1 Sep1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu City to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu City to Kota Kinabalu
Explore the most affordable flight options available from Cebu City to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 26 July 2026.

Mon 7/918:15
CEB
-
BKI
1 stop7h 05m
Philippines AirAsia
Sun 13/901:45
BKI
-
CEB
1 stop19h 45m
Philippines AirAsia
Deal found 24/7RM 793
Sun 6/900:45
CEB
-
BKI
1 stop24h 35m
Multiple Airlines
Sun 13/901:45
BKI
-
CEB
2 stops16h 40m
Multiple Airlines
Deal found 24/7RM 932
Fri 21/818:15
CEB
-
BKI
1 stop7h 05m
Multiple Airlines
Sun 23/807:00
BKI
-
CEB
1 stop14h 55m
Multiple Airlines
Deal found 26/7RM 1,304
Thu 24/914:50
CEB
-
BKI
1 stop19h 10m
Multiple Airlines
Sun 27/908:05
BKI
-
CEB
1 stop13h 50m
Multiple Airlines
Deal found 24/7RM 1,566
Mon 21/1208:00
CEB
-
BKI
1 stop10h 30m
Philippines AirAsia
Fri 25/1218:55
BKI
-
CEB
1 stop12h 35m
Philippines AirAsia
Deal found 24/7RM 1,656
Sat 8/813:25
CEB
-
BKI
1 stop21h 05m
Multiple Airlines
Wed 12/807:00
BKI
-
CEB
1 stop14h 55m
Multiple Airlines
Deal found 22/7RM 1,840
Mon 21/1210:35
CEB
-
BKI
1 stop7h 55m
Multiple Airlines
Fri 25/1211:05
BKI
-
CEB
1 stop10h 20m
Multiple Airlines
Deal found 22/7RM 1,926

Find flight deals from Cebu City to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Cebu City (CEB) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 26 July 2026.

Round-trip from

RM 793

One-way from

RM 401
Philippines AirAsia
  • Philippines AirAsia
  • 7/9-13/9
  • 2 total stops
  • 26h 50m total
  • Cebu City to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 20/10
  • 1 total stop
  • 27h 20m total
  • Cebu City to Kota Kinabalu
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu City to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 26 July 2026.
Use the filters below to find and compare flights from Cebu City to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 7/9

18:15-01:20

1 stop7h 05m

Kota Kinabalu

Sun 13/9

01:45-21:30

1 stop19h 45m

RM 793

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 21/8

18:15-01:20

1 stop7h 05m

Kota Kinabalu

Sun 23/8

07:00-21:55

1 stop14h 55m

RM 1,304

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 24/9

14:50-10:00

1 stop19h 10m

Kota Kinabalu

Sun 27/9

08:05-21:55

1 stop13h 50m

RM 1,566

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 21/12

08:00-18:30

1 stop10h 30m

Kota Kinabalu

Fri 25/12

18:55-07:30

1 stop12h 35m

RM 1,656
Fastest return journey

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 21/12

10:35-18:30

1 stop7h 55m

Kota Kinabalu

Fri 25/12

11:40-21:25

1 stop9h 45m

RM 1,926

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 21/12

05:35-17:05

2 stops35h 30m

Kota Kinabalu

Fri 25/12

18:00-20:10

2 stops26h 10m

RM 2,719
Cheapest one-way

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 18/10

05:10-01:20

1 stop20h 10m

RM 413

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 20/10

02:10-19:30

2 stops17h 20m

RM 695

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 18/10

02:10-19:30

2 stops17h 20m

RM 695

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 22/10

18:15-16:45

2 stops22h 30m

RM 703

Flights are sorted by cheapest return flights first.

Deals found on 24/7

Showing 1-10 of 12 resultsSorted by cheapest first
1
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Best time to book a flight from Cebu City to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu City with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Related info for your journey

Find useful and relevant information for your journey from Cebu City to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How long is the flight from Cebu City to Kota Kinabalu?

    Philippines AirAsia can get you from Cebu City to Kota Kinabalu in just under 7h 05m. Your travel time can differ by up to . The distance from Cebu City to Kota Kinabalu is about 999 km.

  • Can I find deals for flights from Cebu City to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu City to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu City to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu City to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu City to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu City to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car hire
Kota Kinabalu Airport car hire
Labuan Airport car hire
Sandakan car hire

Fly with Cheapflights

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How does Cheapflights help users find flights from Cebu City to Kota Kinabalu?

900+ travel sites are searched through when a user searches for a flight using Cheapflights. From the search interface, users can use filters to choose airlines, airports, flight times, cabin classes and more to their preference. Book your flight to Kota Kinabalu from Cebu City today with Cheapflights!

Why should you use Cheapflights to find cheap flight tickets from Cebu City to Kota Kinabalu?

Millions of users choose and trust Cheapflights to book the best flight deals from Cebu City to Kota Kinabalu for free. We help you search and compare prices from hundreds of airlines for the right flight just for you.

Can Cheapflights find flights from Cebu City to Kota Kinabalu with no change fees?

Users can book flights with no change fees policies with our dedicated filters. Book flights from Cebu City to Kota Kinabalu flexibly with Cheapflights today.

Can Cheapflights notify me if prices for flights from Cebu City to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Cebu City to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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