Cheap flights from Manila to Kota Kinabalu from RM 275
This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 7/9. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
20 Sep — 27 Sep1
Return
1 adult
Economy
Return
1 adult, Economy, 0 bags
Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in February or November, booked 47 days in advance, depart on a Wednesday or Thursday and return on a Friday
Cheap flight deals from Manila to Kota Kinabalu
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Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 21 August 2026.
Fri 11/923:10 -
Nonstop2h 10m
Sun 13/901:45 -
Nonstop2h 10m
Deal found 19/8RM 550
Fri 18/923:10 -
Nonstop2h 10m
Sun 20/901:45 -
Nonstop2h 10m
Deal found 20/8RM 562
Sun 6/923:10 -
Nonstop2h 10m
Wed 9/901:45 -
Nonstop2h 10m
Deal found 19/8RM 566
Fri 4/923:10 -
Nonstop2h 10m
Sun 6/901:45 -
Nonstop2h 10m
Deal found 19/8RM 570
Mon 14/923:10 -
Nonstop2h 10m
Sun 20/901:45 -
Nonstop2h 10m
Deal found 17/8RM 578
Mon 14/923:10 -
Nonstop2h 10m
Wed 16/901:45 -
Nonstop2h 10m
Deal found 18/8RM 586
Wed 9/923:10 -
Nonstop2h 10m
Fri 11/901:45 -
Nonstop2h 10m
Deal found 17/8RM 634
Fri 16/1023:10 -
Nonstop2h 10m
Wed 28/1019:05 -
Nonstop2h 10m
Deal found 18/8RM 639
Sun 18/1023:10 -
Nonstop2h 10m
Wed 28/1019:05 -
Nonstop2h 10m
Deal found 18/8RM 643
Wed 14/1023:10 -
Nonstop2h 10m
Fri 30/1019:05 -
Nonstop2h 10m
Deal found 18/8RM 647
Best flights from Manila to Kota Kinabalu
Discover carefully curated flight deals from Manila to Kota Kinabalu that have cost, travel time, and stopovers in mind to ensure you get the best travel experience. Data last updated 21 August 2026.
Fri 4/923:10 -
Nonstop2h 10m
Sun 6/901:45 -
Nonstop2h 10m
Deal found 19/8RM 570
Sat 10/1006:55 -
1 stop12h 50m
Mon 12/1009:50 -
1 stop8h 50m
Deal found 17/8RM 913
Tue 15/906:55 -
2 stops24h 30m
Mon 21/901:45 -
Nonstop2h 10m
Deal found 16/8RM 1,123
Wed 25/1116:15 -
Nonstop2h 05m
Wed 2/1219:05 -
Nonstop2h 10m
Deal found 17/8RM 679
Wed 23/1216:15 -
Nonstop2h 05m
Sun 27/1219:05 -
Nonstop2h 10m
Deal found 19/8RM 792
Wed 9/911:55 -
2 stops35h 20m
Sat 12/919:20 -
1 stop15h 15m
Deal found 20/8RM 1,790
Thu 15/1008:00 -
1 stop16h 30m
Thu 29/1001:30 -
1 stop17h 05m
Deal found 18/8RM 1,916
Tue 29/919:40 -
1 stop13h 10m
Fri 2/1020:45 -
1 stop9h 05m
Deal found 16/8RM 1,580
Direct flights from Manila to Kota Kinabalu
Explore direct flight options from Manila to Kota Kinabalu based on user searches, and compare prices and availability for your desired travel dates. Data last updated 21 August 2026.
Fri 11/923:10 -
Nonstop2h 10m
Sun 13/901:45 -
Nonstop2h 10m
Deal found 19/8RM 550
Fri 18/923:10 -
Nonstop2h 10m
Sun 20/901:45 -
Nonstop2h 10m
Deal found 20/8RM 562
Sun 6/923:10 -
Nonstop2h 10m
Wed 9/901:45 -
Nonstop2h 10m
Deal found 19/8RM 566
Fri 4/923:10 -
Nonstop2h 10m
Sun 6/901:45 -
Nonstop2h 10m
Deal found 19/8RM 570
Mon 14/923:10 -
Nonstop2h 10m
Sun 20/901:45 -
Nonstop2h 10m
Deal found 17/8RM 578
Mon 14/923:10 -
Nonstop2h 10m
Wed 16/901:45 -
Nonstop2h 10m
Deal found 18/8RM 586
Fri 5/216:15 -
Nonstop2h 05m
Mon 8/219:05 -
Nonstop2h 10m
Deal found 20/8RM 618
Wed 9/923:10 -
Nonstop2h 10m
Fri 11/901:45 -
Nonstop2h 10m
Deal found 17/8RM 634
Fri 16/1023:10 -
Nonstop2h 10m
Wed 28/1019:05 -
Nonstop2h 10m
Deal found 18/8RM 639
Sun 18/1023:10 -
Nonstop2h 10m
Wed 28/1019:05 -
Nonstop2h 10m
Deal found 18/8RM 643
Last-minute flights from Manila to Kota Kinabalu
Discover last-minute flight deals from Manila to Kota Kinabalu. Data last updated 21 August 2026 and is based on user searches.
Wed 26/823:10 -
Nonstop2h 10m
Fri 28/821:00 -
1 stop17h 10m
Deal found 18/8RM 1,479
Fri 28/823:10 -
Nonstop2h 10m
Sun 30/801:45 -
Nonstop2h 10m
Deal found 20/8RM 687
Fri 28/819:40 -
1 stop24h 05m
Sun 30/801:45 -
Nonstop2h 10m
Deal found 21/8RM 1,107
Fri 28/819:40 -
1 stop24h 05m
Mon 31/820:30 -
1 stop22h 10m
Deal found 21/8RM 1,491
Sat 29/820:05 -
1 stop12h 30m
Sun 30/801:45 -
Nonstop2h 10m
Deal found 20/8RM 1,354
One-way flights from Manila to Kota Kinabalu
Search for one-way flight options from Manila to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated 21 August 2026.
Mon 7/923:10 -
Nonstop2h 10m
Deal found 18/8RM 275
Sun 4/1023:10 -
Nonstop2h 10m
Deal found 18/8RM 283
Sun 27/923:10 -
Nonstop2h 10m
Deal found 18/8RM 287
Mon 21/923:10 -
Nonstop2h 10m
Deal found 21/8RM 291
Sun 8/1116:15 -
Nonstop2h 05m
Deal found 21/8RM 295
Mon 11/116:15 -
Nonstop2h 05m
Deal found 19/8RM 299
Fri 18/923:10 -
Nonstop2h 10m
Deal found 16/8RM 303
Mon 28/923:10 -
Nonstop2h 10m
Deal found 18/8RM 311
Wed 23/923:10 -
Nonstop2h 10m
Deal found 21/8RM 331
Wed 16/1216:15 -
Nonstop2h 05m
Deal found 21/8RM 372
Sun 4/1019:40 -
1 stop13h 10m
Deal found 18/8RM 412
Find flight deals from Manila to Kota Kinabalu
Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated 21 August 2026.
Customise your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated 21 August 2026.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.
Fly from
Fly to
Route
Departure
Return
Price
Cheapest return flight
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Fri 4/9
23:10-01:20
Nonstop2h 10m
Kota Kinabalu
Sun 6/9
01:45-03:55
Nonstop2h 10m
RM 570
Fastest return journey
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 25/11
16:15-18:20
Nonstop2h 05m
Kota Kinabalu
Wed 2/12
19:05-21:15
Nonstop2h 10m
RM 679
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 23/12
16:15-18:20
Nonstop2h 05m
Kota Kinabalu
Sun 27/12
19:05-21:15
Nonstop2h 10m
RM 792
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Sat 10/10
06:55-19:45
1 stop12h 50m
Kota Kinabalu
Mon 12/10
09:50-18:40
1 stop8h 50m
RM 913
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Tue 15/9
06:55-07:25
2 stops24h 30m
Kota Kinabalu
Mon 21/9
01:45-03:55
Nonstop2h 10m
RM 1,123
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Tue 29/9
19:40-08:50
1 stop13h 10m
Kota Kinabalu
Fri 2/10
20:45-05:50
1 stop9h 05m
RM 1,580
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Wed 9/9
11:55-23:15
2 stops35h 20m
Kota Kinabalu
Sat 12/9
19:20-10:35
1 stop15h 15m
RM 1,790
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Thu 15/10
08:00-00:30
1 stop16h 30m
Kota Kinabalu
Thu 29/10
01:30-18:35
1 stop17h 05m
RM 1,916
Cheapest one-way
Fastest single journey
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Sun 8/11
16:15-18:20
Nonstop2h 05m
RM 295
ManilaKota Kinabalu
MNL Manila Ninoy Aquino Intl - BKI Kota Kinabalu
MNLBKI
Manila Ninoy Aquino Intl
Mon 11/1
16:15-18:20
Nonstop2h 05m
RM 299
Flights are sorted by cheapest return flights first.
Deals found on 21/8
Showing 1-10 of 19 resultsSorted by cheapest first
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Best time to book a flight from Manila to Kota Kinabalu
Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
MNL-BKI
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.
Cheapflights Insights
Everything you need to know about your flight from Manila to Kota Kinabalu
Prices
Delays
How far ahead should I book a flight from Manila to Kota Kinabalu?
To ensure you get the cheapest price possible for a flight from Manila to Kota Kinabalu, you should look to book at least 46 days in advance of your intended travel date. The price of your flight may increase if you delay and leave booking until a week or so before departure.
What is the cheapest month to book a flight from Manila to Kota Kinabalu?
Currently, February is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 445). Flying from Manila to Kota Kinabalu in June is currently the most expensive (average of RM 663). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
What is the cheapest time of day to fly from MNL to BKI?
Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated 21 August 2026.
Regardless of the time of day you decide to fly, the ticket price will remain around the same. Book flights from Manila to Kota Kinabalu as you normally would.
How much does it cost for a return flight from Manila to Kota Kinabalu?
Airfare is typical for this route at the moment.
Manila to Kota Kinabalu flights typically cost between RM 509 and RM 673 in September.The cheapest return price found within the last 5 days was RM 550 on Philippines AirAsia (11 Sept–13 Sept).
How often are flights from Manila to Kota Kinabalu delayed?
About 21% of weekly flights between Manila and Kota Kinabalu have experienced delays in the past year, with the average delay time being 134 minutes.
What is the most punctual flight time for Manila to Kota Kinabalu flights?
Historically, flights departing at night are less likely to be delayed, whereas flights leaving in the early afternoon tend to experience delays more often.
What day of the week experiences the fewest flight delays on this route?
Tuesday tends to have the lowest number of delays on this route, whereas Wednesday has historically faced a higher average of delays compared to other days of the week.
Which airline has the best punctuality record on Manila to Kota Kinabalu flights?
Over the past year, AirAsia have had the lowest number of delays on this route, with just 18% of flights being delayed.
Reviews of airlines servicing Kota Kinabalu
Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated 21 August 2026.
Read through reviews of airlines operating flights from Manila to Kota Kinabalu, such as Philippines AirAsia. Reviews also offer insight into each airline's entertainment options, comfort, food, crew/service, and boarding process.
Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points
Ontime. But we hated that we paid to upgrade our weight of checked bags and carryon but your staff wanted to recheck and re weight it 2 times at 2 different points
Related info for your journey
Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.
How popular is this Manila to Kota Kinabalu flight route?
Flights from Manila Ninoy Aquino Intl to Kota Kinabalu have been viewed 72 times in the past calendar month.
How long is the flight from Manila to Kota Kinabalu?
Philippines AirAsia and Scoot can get you from Manila to Kota Kinabalu in just under 2h 10m. Your travel time can differ by up to 10h 40m. The distance between Manila and Kota Kinabalu is about 1096 km. When browsing for deals, the options you’ll see will be for both direct flights and flights with stops.
What is the cheapest airline to fly from Manila to Kota Kinabalu round-trip?
Cheapflights users have booked flights from Manila to Kota Kinabalu round-trip from RM 425. Philippines AirAsia is currently priced 19% below the average price you’ll pay for this route.
What are the cheapest flights from Manila to Kota Kinabalu?
While on average a flight from Manila to Kota Kinabalu is generally RM 477, our data shows the cheapest flight currently is RM 238. When looking at the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu), you can expect to pay RM 618 for that flight.
Can I find deals for business class flights from Manila to Kota Kinabalu?
Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.
What is the cheapest month to book a flight from Manila to Kota Kinabalu?
Currently, February is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of RM 445). Flying from Manila to Kota Kinabalu in June is currently the most expensive (average of RM 663). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.
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Fly from Manila to Kota Kinabalu on these airlines
Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on 21 August 2026.
Explore flights to Kota Kinabalu departing from other origins. Flights are based on user searches made on Cheapflights and were last updated on 21 August 2026.
Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 7,457,451 searches. Data last updated 21 August 2026.
Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.
How does Cheapflights help users find flights from Manila to Kota Kinabalu?
Deals for Manila to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.
Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?
By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.
Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?
Cheapflights does show flights with no change fees to all users. To see these options for flights from Manila to Kota Kinabalu, users can toggle the no change fees filter when performing a flight search.
Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?
Yes, Cheapflights has a feature called Price Alert, which notifies users when flight prices change. Track prices for your flight to Kota Kinabalu from Manila today and book when prices fit your budget.
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