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Cheap flights from Cebu to Kota Kinabalu from RM 307

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 16/5. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
1 Apr — 8 Apr1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 2 March 2026.

Thu 16/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Wed 22/710:10
BKI
-
CEB
1 stop11h 15m
Multiple Airlines
Deal found 1/3RM 614
Mon 13/412:55
CEB
-
BKI
1 stop19h 45m
Multiple Airlines
Mon 20/417:15
BKI
-
CEB
1 stop18h 25m
Multiple Airlines
Deal found 27/2RM 711
Wed 20/506:40
CEB
-
BKI
1 stop12h 50m
Scoot
Mon 25/520:30
BKI
-
CEB
1 stop15h 25m
Scoot
Deal found 1/3RM 828
Wed 20/512:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Mon 25/520:30
BKI
-
CEB
2 stops20h 55m
Multiple Airlines
Deal found 1/3RM 1,073
Wed 22/412:00
CEB
-
BKI
1 stop12h 30m
Cathay Pacific
Fri 24/401:15
BKI
-
CEB
1 stop9h 35m
Cathay Pacific
Deal found 27/2RM 1,454
Wed 22/412:00
CEB
-
BKI
1 stop12h 30m
Multiple Airlines
Sat 25/419:05
BKI
-
CEB
2 stops23h 05m
Multiple Airlines
Deal found 27/2RM 1,527
Mon 3/815:40
CEB
-
BKI
1 stop19h 35m
Singapore Airlines
Wed 5/809:45
BKI
-
CEB
1 stop29h 05m
Singapore Airlines
Deal found 26/2RM 1,539
Sun 21/619:20
CEB
-
BKI
1 stop29h 10m
Cathay Pacific
Tue 23/601:15
BKI
-
CEB
1 stop16h 55m
Cathay Pacific
Deal found 26/2RM 1,559

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated 2 March 2026.

Round-trip from

RM 614

One-way from

RM 307

Popular in

January

Cheapest in

February

Average price

RM 715
16/7-22/7
  • 16/7-22/7
  • 2 total stops
  • 19h 20m total
  • Cebu to Kota Kinabalu
Search Deals
16/5
  • 16/5
  • 1 total stop
  • 8h 05m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 21% potential increase in price (RM 858 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 12% potential price decrease (RM 359 potential savings vs. average return price).
Search Deals
Average for round-trip flights in March 2026
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 2 March 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 16/7

12:55-21:00

1 stop8h 05m

Kota Kinabalu

Wed 22/7

10:10-21:25

1 stop11h 15m

RM 614

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 22/4

12:00-00:30

1 stop12h 30m

Kota Kinabalu

Fri 24/4

01:15-10:50

1 stop9h 35m

RM 1,454

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 22/4

12:00-00:30

1 stop12h 30m

Kota Kinabalu

Sat 25/4

19:05-18:10

2 stops23h 05m

RM 1,527

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 3/8

15:40-11:15

1 stop19h 35m

Kota Kinabalu

Wed 5/8

09:45-14:50

1 stop29h 05m

RM 1,539

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 21/6

19:20-00:30

1 stop29h 10m

Kota Kinabalu

Tue 23/6

01:15-18:10

1 stop16h 55m

RM 1,559

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 3/8

12:00-11:55

2 stops23h 55m

Kota Kinabalu

Wed 5/8

05:20-18:10

2 stops12h 50m

RM 1,613

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 28/5

12:00-00:30

1 stop12h 30m

Kota Kinabalu

Sun 31/5

12:40-10:50

2 stops22h 10m

RM 1,625

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 27/5

03:10-15:35

2 stops12h 25m

Kota Kinabalu

Sun 31/5

17:45-10:35

2 stops16h 50m

RM 1,807

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 21/6

07:05-17:00

2 stops33h 55m

Kota Kinabalu

Wed 24/6

05:20-04:55

2 stops23h 35m

RM 1,908

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 24/4

12:55-21:00

1 stop8h 05m

RM 311

Flights are sorted by cheapest return flights first.

Deals found on 1/3

Showing 1-10 of 19 resultsSorted by cheapest first
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Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.

  • How long is the flight from Cebu to Kota Kinabalu?

    Departing from Cebu to Kota Kinabalu will take you 12h 30m. Cebu and Kota Kinabalu are separated by a distance of 999 km. This flight may include one or multiple stops.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
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Deals for Cebu to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Cebu.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Cebu to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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