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Cheap flights from Cebu to Kota Kinabalu from RM 434

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 17/2. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
7 Feb — 14 Feb1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated 8 January 2026.

Round-trip from

RM 629

One-way from

RM 434

Popular in

March

Cheapest in

February

Average price

RM 1,538
Philippines AirAsia
  • Philippines AirAsia
  • 9/3-13/3
  • 2 total stops
  • 19h 35m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 17/2
  • 1 total stop
  • 18h 45m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (RM 646 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 9% potential price decrease (RM 311 potential savings vs. average return price).
Search Deals
Average for round-trip flights in January 2026
Search Deals

Find flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 8 January 2026.

Mon 9/306:35CEB - BKI
1 stop11h 55mPhilippines AirAsia
Fri 13/318:55BKI - CEB
1 stop7h 40mPhilippines AirAsia
Deal found 6/1RM 629
Fri 20/206:35CEB - BKI
1 stop11h 55mPhilippines AirAsia
Fri 27/218:55BKI - CEB
1 stop12h 35mPhilippines AirAsia
Deal found 6/1RM 649
Mon 9/313:30CEB - BKI
2 stops21h 35mMultiple Airlines
Fri 13/318:55BKI - CEB
1 stop7h 40mMultiple Airlines
Deal found 6/1RM 669
Fri 20/206:35CEB - BKI
1 stop11h 55mMultiple Airlines
Fri 27/206:00BKI - CEB
2 stops15h 25mMultiple Airlines
Deal found 6/1RM 722
Thu 5/223:45CEB - BKI
1 stop18h 45mMultiple Airlines
Thu 19/223:25BKI - CEB
1 stop12h 30mMultiple Airlines
Deal found 6/1RM 755
Thu 8/103:20CEB - BKI
1 stop11h 15mMultiple Airlines
Mon 12/109:10BKI - CEB
1 stop12h 15mMultiple Airlines
Deal found 8/1RM 1,201
Thu 8/103:20CEB - BKI
1 stop11h 15mMultiple Airlines
Sun 11/108:05BKI - CEB
1 stop13h 20mMultiple Airlines
Deal found 8/1RM 1,242

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 8 January 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Departure

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 9/3

06:35-18:30

1 stop11h 55m

Kota Kinabalu

Fri 13/3

18:55-02:35

1 stop7h 40m

RM 629

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 20/2

06:35-18:30

1 stop11h 55m

Kota Kinabalu

Fri 27/2

18:55-07:30

1 stop12h 35m

RM 649

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 9/3

13:30-11:05

2 stops21h 35m

Kota Kinabalu

Fri 13/3

18:55-02:35

1 stop7h 40m

RM 669

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Fri 20/2

06:35-18:30

1 stop11h 55m

Kota Kinabalu

Fri 27/2

06:00-21:25

2 stops15h 25m

RM 722

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 5/2

23:45-18:30

1 stop18h 45m

Kota Kinabalu

Thu 19/2

23:25-11:55

1 stop12h 30m

RM 755

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 19/2

00:25-17:05

2 stops16h 40m

Kota Kinabalu

Fri 27/2

18:00-23:45

2 stops29h 45m

RM 1,688

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 5/2

23:35-15:20

2 stops15h 45m

Kota Kinabalu

Thu 19/2

18:00-23:00

2 stops29h 00m

RM 1,761

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 20/6

03:25-15:35

2 stops12h 10m

Kota Kinabalu

Wed 24/6

05:20-00:30

2 stops19h 10m

RM 1,980

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 17/2

23:45-18:30

1 stop18h 45m

RM 434

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 17/2

03:05-18:30

1 stop15h 25m

RM 434

Flights are sorted by cheapest return flights first.

Deals found on 6/1

Showing 1-10 of 12 results
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.

  • How long is the flight from Cebu to Kota Kinabalu?

    Departing from Cebu to Kota Kinabalu will take you 11h 55m. Cebu and Kota Kinabalu are separated by a distance of 999 km.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
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Deals for Cebu to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

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By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Cebu.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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