How long is the flight from Cebu to Kota Kinabalu?

Departing from Cebu to Kota Kinabalu will take you 11h 55m. Cebu and Kota Kinabalu are separated by a distance of 999 km.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travellers hoping to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

What is the cheapest time of day to fly from CEB to BKI?

When flying from Cebu to Kota Kinabalu, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

What airport do you fly into for flights to Kota Kinabalu from Cebu?

Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.

Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

How can I find direct flights from Cebu to Kota Kinabalu?

After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

Can I find deals for business class flights from Cebu to Kota Kinabalu?

Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

RM 437+ Cheap Flights from Cebu to Kota Kinabalu

Cheap flight deals from Cebu to Kota Kinabalu

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Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 3 September 2026.

Sun 25/1006:25 -

1 stop11h 55m

Sun 1/1119:05 -

1 stop10h 50m

Deal found 31/8RM 845

Tue 29/922:00 -

1 stop27h 20m

Mon 7/1219:05 -

1 stop5h 45m

Deal found 2/9RM 1,083

Sun 25/1008:05 -

1 stop10h 15m

Sun 1/1119:05 -

2 stops24h 45m

Deal found 31/8RM 1,099

Sat 26/1223:25 -

1 stop18h 55m

Thu 31/1222:40 -

1 stop22h 45m

Deal found 30/8RM 1,273

Mon 21/1206:25 -

1 stop11h 55m

Fri 25/1211:40 -

1 stop9h 45m

Deal found 29/8RM 1,633

Sat 24/1000:05 -

2 stops15h 15m

Sun 1/1105:20 -

2 stops19h 10m

Deal found 31/8RM 2,227

Find flight deals from Cebu to Kota Kinabalu

Round-trip from	RM 845
One-way from	RM 437

Philippines AirAsia
25/10-1/11
2 total stops
22h 45m total
Cebu to Kota Kinabalu

Search Deals

Scoot
5/10
1 total stop
9h 15m total
Cebu to Kota Kinabalu

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Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 29/9

22:00-01:20

1 stop27h 20m

Kota Kinabalu

Mon 7/12

19:05-00:50

1 stop5h 45m

RM 1,083

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Sun 25/10

08:05-18:20

1 stop10h 15m

Kota Kinabalu

Sun 1/11

19:05-19:50

2 stops24h 45m

RM 1,099

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 4/1

06:25-18:20

1 stop11h 55m

Kota Kinabalu

Fri 8/1

19:05-10:00

1 stop14h 55m

RM 1,273

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 21/12

06:25-18:20

1 stop11h 55m

Kota Kinabalu

Fri 25/12

19:05-05:55

1 stop10h 50m

RM 1,504

Fastest return journey

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 21/12

06:25-18:20

1 stop11h 55m

Kota Kinabalu

Fri 25/12

11:40-21:25

1 stop9h 45m

RM 1,633

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Mon 4/1

09:10-18:20

2 stops9h 10m

Kota Kinabalu

Fri 8/1

19:05-09:25

2 stops14h 20m

RM 1,989

Cheapest one-way

Fastest single journey

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Fri 9/10

17:00-01:20

1 stop8h 20m

RM 465

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 29/9

22:00-01:20

1 stop27h 20m

RM 469

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 3/11

22:30-18:20

1 stop19h 50m

RM 509

Cebu CityKota Kinabalu

CEB Cebu City Mactan Intl - BKI Kota Kinabalu

CEBBKI

Cebu City Mactan Intl

Tue 6/10

22:00-19:30

2 stops21h 30m

RM 602

Flights are sorted by cheapest return flights first.

Deals found on 31/8

Showing 1-10 of 15 resultsSorted by cheapest first

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.

CEB-BKI

Estimated return price

Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

PHCEB-BKI

CEB-BKI

No data available for this route at this time. Please check back soon.

Related info for your journey

What airport do you fly into for flights to Kota Kinabalu from Cebu?
Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.
How long is the flight from Cebu to Kota Kinabalu?
Departing from Cebu to Kota Kinabalu will take you 11h 55m. Cebu and Kota Kinabalu are separated by a distance of 999 km.
Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?
Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.
How can I find direct flights from Cebu to Kota Kinabalu?
After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.
Can I find deals for business class flights from Cebu to Kota Kinabalu?
Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Cebu.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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Cheap flights from Cebu to Kota Kinabalu from RM 437

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 5/10. Fares are subject to change and may not be available on all flights or dates of travel.

Cheap flight deals from Cebu to Kota Kinabalu

Cheapest flights from Cebu to Kota KinabaluExplore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 3 September 2026.

Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 3 September 2026.

Best flights from Cebu to Kota KinabaluDiscover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and stopovers in mind to ensure you get the best travel experience. Data last updated 3 September 2026.

Discover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and stopovers in mind to ensure you get the best travel experience. Data last updated 3 September 2026.

Last-minute flights from Cebu to Kota KinabaluDiscover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated 3 September 2026 and is based on user searches.

Discover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated 3 September 2026 and is based on user searches.

One-way flights from Cebu to Kota KinabaluSearch for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated 3 September 2026.

Search for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated 3 September 2026.

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Related info for your journey

What airport do you fly into for flights to Kota Kinabalu from Cebu?

How long is the flight from Cebu to Kota Kinabalu?

Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

How can I find direct flights from Cebu to Kota Kinabalu?

Can I find deals for business class flights from Cebu to Kota Kinabalu?

Browse thousands of different options on Cheapflights for your next trip

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Alternative routes for Cebu to Kota Kinabalu

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.

Direct flights to Sabah

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Other flights to Kota Kinabalu

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

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Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 3 September 2026.

Best flights from Cebu to Kota Kinabalu
Discover carefully curated flight deals from Cebu to Kota Kinabalu that have cost, travel time, and stopovers in mind to ensure you get the best travel experience. Data last updated 3 September 2026.

Last-minute flights from Cebu to Kota Kinabalu
Discover last-minute flight deals from Cebu to Kota Kinabalu. Data last updated 3 September 2026 and is based on user searches.

One-way flights from Cebu to Kota Kinabalu
Search for one-way flight options from Cebu to Kota Kinabalu. Find affordable one-way fares based on user searches. Data last updated 3 September 2026.