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Cheap flights from Cebu to Kota Kinabalu from RM 498

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 19/5. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
17 May — 24 May1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 17 April 2026.

Tue 28/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Tue 11/810:10
BKI
-
CEB
1 stop11h 15m
Multiple Airlines
Deal found 15/4RM 699
Sun 26/703:05
CEB
-
BKI
1 stop7h 25m
Multiple Airlines
Fri 14/810:10
BKI
-
CEB
1 stop11h 15m
Multiple Airlines
Deal found 15/4RM 865
Sun 26/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Thu 13/813:00
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 15/4RM 889
Sat 25/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Wed 12/813:00
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 15/4RM 905
Sat 25/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Mon 10/801:45
BKI
-
CEB
1 stop5h 35m
Multiple Airlines
Deal found 15/4RM 913
Sat 25/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Fri 7/801:45
BKI
-
CEB
1 stop6h 45m
Multiple Airlines
Deal found 15/4RM 917
Sat 25/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Sun 9/801:45
BKI
-
CEB
1 stop5h 35m
Multiple Airlines
Deal found 15/4RM 924
Fri 31/719:20
CEB
-
BKI
1 stop6h 00m
Multiple Airlines
Fri 14/810:10
BKI
-
CEB
1 stop11h 15m
Multiple Airlines
Deal found 15/4RM 932
Sat 25/712:55
CEB
-
BKI
1 stop8h 05m
Multiple Airlines
Fri 14/813:00
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 15/4RM 944
Mon 4/518:05
CEB
-
BKI
1 stop7h 15m
Multiple Airlines
Wed 13/513:00
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 12/4RM 1,003
Thu 7/503:05
CEB
-
BKI
1 stop14h 40m
Multiple Airlines
Wed 13/513:00
BKI
-
CEB
1 stop8h 25m
Multiple Airlines
Deal found 13/4RM 1,007
Sat 25/412:55
CEB
-
BKI
1 stop10h 00m
Multiple Airlines
Tue 28/421:35
BKI
-
CEB
1 stop14h 05m
Multiple Airlines
Deal found 15/4RM 1,130

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated 17 April 2026.

Round-trip from

RM 699

One-way from

RM 498

Popular in

January

Cheapest in

February
28/7-11/8
  • 28/7-11/8
  • 2 total stops
  • 19h 20m total
  • Cebu to Kota Kinabalu
Search Deals
19/5
  • 19/5
  • 1 total stop
  • 13h 40m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 22% potential increase in price (RM 926 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 14% potential price decrease (RM 418 potential savings vs. average return price).
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 17 April 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Departure

Return

Price

Cheapest return flight
Fastest return journey

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 4/5

18:05-01:20

1 stop7h 15m

Kota Kinabalu

Wed 13/5

13:00-21:25

1 stop8h 25m

RM 1,003

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 7/5

03:05-17:45

1 stop14h 40m

Kota Kinabalu

Wed 13/5

13:00-21:25

1 stop8h 25m

RM 1,007

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 30/4

14:30-22:55

1 stop8h 25m

Kota Kinabalu

Tue 5/5

11:30-11:55

2 stops24h 25m

RM 1,691

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 11/10

15:40-08:50

1 stop17h 10m

Kota Kinabalu

Thu 15/10

12:15-14:50

1 stop26h 35m

RM 1,865

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 10/10

02:05-11:15

1 stop9h 10m

Kota Kinabalu

Thu 15/10

12:15-01:30

1 stop13h 15m

RM 1,908

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 4/5

23:35-17:00

2 stops17h 25m

Kota Kinabalu

Wed 13/5

05:20-04:10

2 stops22h 50m

RM 2,193

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 11/10

19:45-17:00

2 stops21h 15m

Kota Kinabalu

Thu 15/10

05:20-08:00

2 stops26h 40m

RM 2,284
Cheapest one-way
Fastest single journey

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 19/5

03:05-16:45

1 stop13h 40m

RM 498

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 17/5

14:30-13:00

1 stop22h 30m

RM 553

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 6/5

14:30-08:40

1 stop18h 10m

RM 632

Flights are sorted by cheapest return flights first.

Deals found on 13/4

Showing 1-10 of 14 resultsSorted by cheapest first
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu
No data available for this route at this time. Please check back soon.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.

  • How long is the flight from Cebu to Kota Kinabalu?

    Departing from Cebu to Kota Kinabalu will take you 17h 10m. Cebu and Kota Kinabalu are separated by a distance of 999 km.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
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Cebu City to Kota Kinabalu flights

Fly with Cheapflights

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Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Cebu.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

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Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Cebu to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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