Find flights
When to book
FAQs

Cheap flights from Cebu to Kota Kinabalu from RM 316

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 23/3. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
20 Feb — 27 Feb1
1 adult
1 adult, Economy, 0 bags

Cheap flight deals from Cebu to Kota Kinabalu

Enter your travel dates to find the best prices.

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on 21 January 2026.

Thu 5/312:55
CEB
-
BKI
1 stop10h 05m
Multiple Airlines
Thu 12/307:50
BKI
-
CEB
1 stop13h 35m
Multiple Airlines
Deal found 19/1RM 701
Sat 20/600:05
CEB
-
BKI
2 stops39h 30m
Philippine Airlines
Wed 24/605:20
BKI
-
CEB
2 stops25h 05m
Philippine Airlines
Deal found 19/1RM 1,981
Sat 20/601:55
CEB
-
BKI
1 stop9h 20m
Scoot
Wed 24/620:30
BKI
-
CEB
1 stop28h 45m
Scoot
Deal found 19/1RM 2,013
Sun 21/615:40
CEB
-
BKI
1 stop17h 05m
Singapore Airlines
Wed 24/609:45
BKI
-
CEB
1 stop29h 05m
Singapore Airlines
Deal found 18/1RM 2,143

Find flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated 21 January 2026.

Round-trip from

RM 701

One-way from

RM 316

Popular in

March

Cheapest in

February

Average price

RM 1,535
5/3-12/3
  • 5/3-12/3
  • 2 total stops
  • 23h 40m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 23/3
  • 1 total stop
  • 11h 55m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 14% potential increase in price (RM 643 potential increase over avg. return price).
Search Deals
Cheapest flight prices on average. 9% potential price decrease (RM 309 potential savings vs. average return price).
Search Deals
Average for round-trip flights in January 2026
Search Deals

Cheapflights Fare Finder

 
Customise your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 407,431 searches. Data last updated 21 January 2026.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Departure

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 4/3

03:20-11:55

1 stop8h 35m

Kota Kinabalu

Thu 12/3

09:10-21:00

2 stops11h 50m

RM 899

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 20/6

00:05-15:35

2 stops39h 30m

Kota Kinabalu

Wed 24/6

05:20-06:25

2 stops25h 05m

RM 1,981

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 20/6

01:55-11:15

1 stop9h 20m

Kota Kinabalu

Wed 24/6

20:30-01:15

1 stop28h 45m

RM 2,013

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sun 21/6

15:40-08:45

1 stop17h 05m

Kota Kinabalu

Wed 24/6

09:45-14:50

1 stop29h 05m

RM 2,143

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Mon 23/3

06:35-18:30

1 stop11h 55m

RM 316

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Sat 21/3

03:05-18:30

1 stop15h 25m

RM 328

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 19/3

03:05-18:30

1 stop15h 25m

RM 352

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 17/2

23:45-18:30

1 stop18h 45m

RM 365

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 25/3

09:20-18:30

2 stops9h 10m

RM 397

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Tue 24/3

01:10-19:00

1 stop17h 50m

RM 458

Flights are sorted by cheapest return flights first.

Deals found on 19/1

Showing 1-10 of 15 results
1
2

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated return price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

How much does it cost for a return flight from Cebu to Kota Kinabalu?

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Located just 5.8 km from the city centre, Kota Kinabalu (BKI) is the airport most travelers will use when flying to Kota Kinabalu from Cebu.

  • How long is the flight from Cebu to Kota Kinabalu?

    Departing from Cebu to Kota Kinabalu will take you 9h 20m. Cebu and Kota Kinabalu are separated by a distance of 999 km. This flight may include one or multiple stops.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers holiday packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

Toggle through the tabs below to find thousands of options on Cheapflights for your next trip.

Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Cebu City to Kota Kinabalu flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travellers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Cebu to Kota Kinabalu?

Deals for Cebu to Kota Kinabalu flights are sourced from 900+ travel sites when you use Cheapflights. When all flight results come back, Cheapflights lets you sort and filter flights using different criteria to choose better, like price, airport, cabin class, and plenty of other options.

Why should you use Cheapflights to find cheap flight tickets from Cebu to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Cebu.

Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Yes! Cheapflights helps users easily find flights from Cebu to Kota Kinabalu with no change fees.

Can Cheapflights notify me if prices for flights from Cebu to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Cebu to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

100% Free

Cheapflights is completely free to use, so you can start saving the moment you arrive.

Book With Flexibility

Our users can plan ahead with confidence and find flights with no change fees.

Travel Smart

Millions of people come to us for their flight needs every year. We help make travel planning easy by providing useful insights and data-driven graphs that can inform your decisions.